PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G281900.3.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 406aa    MW: 44548.2 Da    PI: 5.139
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G281900.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM156.71e-4861341129
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                           lppGfrFhPtd el v+yLk+k+ gk+l++ ++i+e+d+yk+ PwdLp+  ++++++  wyfF++rd+ky++g r+nr+t  gyWkatg
  Sobic.006G281900.3.p   6 LPPGFRFHPTDVELTVYYLKRKLLGKHLRC-NAITEIDLYKFAPWDLPEraSLESNDLVWYFFCPRDRKYSSGLRTNRSTGVGYWKATG 93 
                           79****************************.89***************52355556669****************************** PP

                   NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                           kd++v+  + ++vg+k+tLvf+ g+ p+g +tdWvm eyrle
  Sobic.006G281900.3.p  94 KDRPVVY-NARTVGMKRTLVFHLGKPPRGDRTDWVMYEYRLE 134
                           *******.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.15E-603156IPR003441NAC domain
PROSITE profilePS5100555.0666156IPR003441NAC domain
PfamPF023654.6E-267133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MAKTSLPPGF RFHPTDVELT VYYLKRKLLG KHLRCNAITE IDLYKFAPWD LPERASLESN  60
DLVWYFFCPR DRKYSSGLRT NRSTGVGYWK ATGKDRPVVY NARTVGMKRT LVFHLGKPPR  120
GDRTDWVMYE YRLEDEELAA SGVKLDACVL CKIFQKSGPG PKTGAQYGAP FNEEDWNDAS  180
NVECSPCAPS VAPRVPESSN GVLNSAGQHL AVSYDGKVSS GSAAESINRP AINGVHPDIP  240
NDCIHIQLLA EIIRCSSMHL LCTGGEDGLL PDSTADYDSD NRVSLDDVET IFCEVDELGP  300
HALVNNTNHC DSCAEHLIHP VLVARGAEQY LELNDLSFSL TDGPGSCGML FSNDVSVEQP  360
PDLELSTLGG GSQDLIQNWS HLAHTLMDLG GSGRHGIMLL FFPFR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-52215711169Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G281900.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0683710.0BT068371.1 Zea mays full-length cDNA clone ZM_BFb0135E15 mRNA, complete cds.
GenBankBT0685320.0BT068532.1 Zea mays full-length cDNA clone ZM_BFb0292O13 mRNA, complete cds.
GenBankBT0839010.0BT083901.1 Zea mays full-length cDNA clone ZM_BFb0052I14 mRNA, complete cds.
GenBankKJ7279520.0KJ727952.1 Zea mays clone pUT6050 NAC transcription factor (NAC120) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002448842.10.0NAC transcription factor 32
RefseqXP_021318096.10.0NAC transcription factor 32
RefseqXP_021318097.10.0NAC transcription factor 32
RefseqXP_021318098.10.0NAC transcription factor 32
TrEMBLA0A1Z5RGM00.0A0A1Z5RGM0_SORBI; Uncharacterized protein
STRINGSb06g034210.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP148561721
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09330.41e-80NAC domain containing protein 82