PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G279400.1.p
Common NameSb06g034010, SORBIDRAFT_06g034010
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 334aa    MW: 37001.1 Da    PI: 6.5059
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G279400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.96.9e-5291541128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk........kvkaeekewyfFskrdkkyatgkrknratksg 81 
                           +ppGfrFhPt+eelv +yL++kv+++k++l ++i+evd+y++ePwdL++         ++++++ewyfFs +d+ky++g+r+nrat++g
  Sobic.006G279400.1.p   9 VPPGFRFHPTEEELVGYYLARKVASQKIDL-DIIQEVDLYRIEPWDLQErcrqhaggGHDEQTTEWYFFSYKDRKYPSGTRTNRATAAG 96 
                           69****************************.99**************95466555443333666************************* PP

                   NAM  82 yWkatgkdkevlsk...........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           +Wkatg+dk+vls+           ++ ++g++ktLvfykgrap+g+k+dW+mheyrl
  Sobic.006G279400.1.p  97 FWKATGRDKPVLSSsctrtsrcgggSRVVIGMRKTLVFYKGRAPNGRKSDWIMHEYRL 154
                           *************9887776666555555***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-565175IPR003441NAC domain
PROSITE profilePS5100556.1649175IPR003441NAC domain
PfamPF023652.7E-2710154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009735Biological Processresponse to cytokinin
GO:0009737Biological Processresponse to abscisic acid
GO:0009741Biological Processresponse to brassinosteroid
GO:0045491Biological Processxylan metabolic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048759Biological Processxylem vessel member cell differentiation
GO:0050832Biological Processdefense response to fungus
GO:0071365Biological Processcellular response to auxin stimulus
GO:0090059Biological Processprotoxylem development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MDQQEESCVP PGFRFHPTEE ELVGYYLARK VASQKIDLDI IQEVDLYRIE PWDLQERCRQ  60
HAGGGHDEQT TEWYFFSYKD RKYPSGTRTN RATAAGFWKA TGRDKPVLSS SCTRTSRCGG  120
GSRVVIGMRK TLVFYKGRAP NGRKSDWIMH EYRLQSNEHA PAQEEGWVVC RAFQKPIPNQ  180
QRPFFPTSYG AGYYDHHLST TTTTRLNVDG DRHMHFLGSS SALLHHPAGL LSSFPPSSLY  240
SDDDLESKKH LFSMPPLESP TAAIACCSDG GGGGYAPATT QRSSYDEHEL MIQQEGGEGE  300
QAAAAAGAID WNFLDSLLSA TSQLHGPSGS LLQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-4921758168Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00017PBMTransfer from AT1G71930Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G279400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002448830.10.0NAC domain-containing protein 30
RefseqXP_021318357.10.0NAC domain-containing protein 30
TrEMBLC5YB400.0C5YB40_SORBI; Uncharacterized protein
STRINGSb06g034010.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25943791
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71930.17e-90vascular related NAC-domain protein 7