PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G278400.1.p
Common NameSb06g033920, SORBIDRAFT_06g033920
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 496aa    MW: 52680.2 Da    PI: 8.8735
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G278400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2218.8e-07235257223
                           EETTTTEEESSHHHHHHHHHH.T CS
               zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                           +CpdCg++F r+++L+ H++  H
  Sobic.006G278400.1.p 235 PCPDCGEVFVRQESLHLHQSIrH 257
                           7******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280234257IPR007087Zinc finger, C2H2
PROSITE profilePS501579.162234262IPR007087Zinc finger, C2H2
SuperFamilySSF563999.5E-18259306No hitNo description
Gene3DG3DSA:3.90.228.108.8E-12260494IPR012317Poly(ADP-ribose) polymerase, catalytic domain
SuperFamilySSF563999.5E-18337494No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MVEPGRSAGV REAKKSSTTS SSTAAAAMVK KKLTTTKKRP EKEEKAEKKQ SRQCTEPESP  60
SYRLALKSLF SCRNSHGHGQ HHARPRAQQD TGSRSKRLGC SAPSICKLRD DSESRHQRMP  120
VPPPEDTMGG TTAGEPCKRR ASVSGSSERC VKKPLSESKC GTGRSSSATA ASSSSNSKQL  180
QRGGSSLSSS SSSGGSSFRA GMQLRRLSGC YECHMVVDPV SGSTSMRATA STICPCPDCG  240
EVFVRQESLH LHQSIRHAVS ELSADDTSRN IIEIIFQSSW LKKQSPVCMV DRILKVHNTP  300
RTLARFEEYR DAVKARAAAG GGAGQQPVAM GANNRHPRCT ADGNELLRFH CATLACSLGL  360
NGATHLCDAA AAAGGCAACG IIRDGFSRSA SDGGVLTMAT SGRAHDAVPV PVPAAEGEEA  420
ERQQRRAMLV CRVIAGRVKR PKEEAEQASE EEAGPGEEEE YDSVAGSAGV YSNLEELLVF  480
NPRAILPCFV VVYKA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.121440.0embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G278400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002447373.10.0uncharacterized protein LOC8076513
TrEMBLC5YB320.0C5YB32_SORBI; Uncharacterized protein
STRINGSb06g033920.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26333880
Representative plantOGRP6611439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.14e-80C2H2-like zinc finger protein