PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.006G276566.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | Nin-like | ||||||||
Protein Properties | Length: 118aa MW: 13760.2 Da PI: 11.0462 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 48.9 | 1.3e-15 | 29 | 70 | 9 | 50 |
RWP-RK 9 dlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkik 50 d+ + +lp+++AA Lg++ ++ r+CR++GI+RWP+Rki Sobic.006G276566.1.p 29 DIVWFIHLPMRQAAMALGMSCATIQRTCRRNGIQRWPSRKIG 70 5666789*********************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 14.413 | 3 | 93 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.5E-13 | 33 | 71 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 118 aa Download sequence Send to blast |
MPSSSVIQQH SHATDPSSSI SRRKKCTDDI VWFIHLPMRQ AAMALGMSCA TIQRTCRRNG 60 IQRWPSRKIG ALDRKIAKLE NNMFLKRDRV KRAKMLDEWN KLSRERMDIY CYFMSLI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.006G276566.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A1Z5RGY1 | 1e-81 | A0A1Z5RGY1_SORBI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8055 | 29 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24020.1 | 5e-10 | NIN like protein 7 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.006G276566.1.p |