PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.006G262100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | ARF | ||||||||
Protein Properties | Length: 820aa MW: 91051.2 Da PI: 6.3628 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.2 | 6.6e-23 | 135 | 236 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 f+k+lt sd++++g +++p++ ae+ ++++++ +l+ +d + +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F Sobic.006G262100.1.p 135 FCKTLTASDTSTHGGFSVPRRAAERVfppldftQQPPAQ--ELIARDIHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLF 221 99***********************9*****86555544..8*********************************************** PP EE-SSSEE..EEEEE-S CS B3 83 kldgrsefelvvkvfrk 99 ++++ +l+++++r+ Sobic.006G262100.1.p 222 I--WNEKNQLLLGIRRA 236 *..8899999****997 PP | |||||||
2 | Auxin_resp | 112.6 | 3.7e-37 | 261 | 344 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seFv++++k+ ka+ +++svGmRf+m fete+ss rr++Gt++ vsd+dpvrWp S Wrs+k Sobic.006G262100.1.p 261 AAHAAATNSRFTIFYNPRASPSEFVIPLSKYIKAVFhTRISVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVK 344 79*******************************986599******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 5.62E-48 | 120 | 264 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-41 | 127 | 250 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.05E-21 | 134 | 235 | No hit | No description |
PROSITE profile | PS50863 | 12.308 | 135 | 237 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.1E-24 | 135 | 237 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.1E-21 | 135 | 236 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.5E-32 | 261 | 344 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 3.2E-7 | 720 | 795 | No hit | No description |
PROSITE profile | PS51745 | 24.037 | 720 | 804 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 820 aa Download sequence Send to blast |
MSSSSGASIG QPPPPPPAPP PEEEKKCLNS ELWHACAGPL VCLPTVGTRV VYFPQGHSEQ 60 VAASTNKEVD GHIPNYPNLP PQLICQLHDV TMHADVETDE VYAQMTLQPL NPQEQNDAYL 120 PAEMGIMSKQ PTNYFCKTLT ASDTSTHGGF SVPRRAAERV FPPLDFTQQP PAQELIARDI 180 HDVEWKFRHI FRGQPKRHLL TTGWSVFVSA KRLVAGDSVL FIWNEKNQLL LGIRRASRPQ 240 TVMPSSVLSS DSMHIGLLAA AAHAAATNSR FTIFYNPRAS PSEFVIPLSK YIKAVFHTRI 300 SVGMRFRMLF ETEESSVRRY MGTITEVSDA DPVRWPSSYW RSVKVGWDES TAGERPPRVS 360 LWEIEPLTTF PMYPSLFPLR VKHPWYSGVA ALHDDSNALM WLRGVAGEGG FQSLNFQSPG 420 IGSWGQQRLH PSLLSNDHDQ YQAVVAAAAA SQSGGYLKQQ FLHLQQPMQS PQEQCNLNPL 480 LQQQILQQAS QQQMVSPDAQ NIQSVLSPNA IQQQLHQLQQ MQHAHNDQKQ KIQPDQPYQV 540 PSSAVLPSPT SLPSHLREKF GFSDPNVNSS SFISSSSNEN MLESNFLQGS SKSVDLSRFN 600 QPVVSEQQQQ QQQQAWKQKF MGSQSMSFGG LVSLNSPTSK DGSADNKIGR DVQNQSLFSP 660 QVDSSSLLYN MVPNLTSNVA DNNISVIPSG STYLQSPMYG CLDDSSGLLQ NTGENDPAAR 720 TFVKVYKSGS VGRSLDITRF SNYAELREEL GQMFGIKGQL DDPDRSGWQL VFVDRENDVL 780 LLGDDPWESF VNSVWYIKIL SPEDVHKMGK PGNDPRYLS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-161 | 24 | 365 | 47 | 388 | Auxin response factor 5 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.18998 | 0.0 | leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00033 | PBM | Transfer from AT5G37020 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.006G262100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK071455 | 0.0 | AK071455.1 Oryza sativa Japonica Group cDNA clone:J023093B04, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021319501.1 | 0.0 | auxin response factor 12 | ||||
Refseq | XP_021319502.1 | 0.0 | auxin response factor 12 | ||||
Swissprot | Q0J951 | 0.0 | ARFL_ORYSJ; Auxin response factor 12 | ||||
Swissprot | Q258Y5 | 0.0 | ARFL_ORYSI; Auxin response factor 12 | ||||
TrEMBL | A0A1B6PP06 | 0.0 | A0A1B6PP06_SORBI; Auxin response factor | ||||
STRING | Pavir.Ga00205.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5850 | 30 | 39 | Representative plant | OGRP856 | 14 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.2 | 0.0 | auxin response factor 6 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.006G262100.1.p |
Publications ? help Back to Top | |||
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