PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G261800.1.p
Common NameSb06g032480, SORBIDRAFT_06g032480
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C3H
Protein Properties Length: 691aa    MW: 77580.1 Da    PI: 5.3276
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G261800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.12.6e-07108131327
                           S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                           +++C +f++ G C  GdrC+F Hgp
  Sobic.006G261800.1.p 108 MVPCYYFQK-GNCLKGDRCPFYHGP 131
                           789******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.9812453IPR000571Zinc finger, CCCH-type
SMARTSM003560.00142452IPR000571Zinc finger, CCCH-type
PfamPF156633.7E-122680No hitNo description
PROSITE profilePS5010311.1315581IPR000571Zinc finger, CCCH-type
SMARTSM003560.35780IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-6105131IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.051105132IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.37E-6106130IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4109131IPR000571Zinc finger, CCCH-type
PfamPF146080.27110130No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    Send to blast
MEVDGAAGAA AAAAKPLTPE EEALRRSTDC VYFLASPLTC KKGNECDFRH SEGARMNPRD  60
CWYWLNGSCL NPKCAFRHPP IDGLFGAPTS GLPPVSAHYG AYNPGKQMVP CYYFQKGNCL  120
KGDRCPFYHG PQTSGNNPAE QAAKITSFPL EPSQAQKNEE AAAPNNSTQQ EARITDNWTT  180
AHISKSGAGA IPADVASNAV KSGPNSEQAP SNTLAAKKSF TTEDHPMHYQ NQVPVEGEPV  240
QDWNQNFEMP PTDDLPQNSR EADDFLGESS PGFDVLVDND GDGAAYLHDE EDFGREMYPV  300
EDYEYAPADF DIRAHHESEQ FNNGMGENGR IGQYDGYERK RRRSSSERSL DRPYHPDRRF  360
LHRELDRDKI DGSDLRHQLR RRRINGPSTA ISPEQANGDR HWRDERYRER PHGGHHTHRD  420
RYQGPRGSTL SSRLQARIKL PRRSPDRVDI RFEDERDRRR LRDRFSPVRR MDFHGGRHRE  480
SGQNQERSHR RSSELVSTVR HADGLKARRD AVDSAHFAAR RNLGEPRKGN GIVESEASLD  540
FEGPKPLSVI LQRKREAAQG NNHEKSAEVA VMQTGSLVET EKKGCGNITS SADCKSGSGD  600
EEYKEEDHIP VDAHRQSSSH GDKFEVEYAA EVDAEGNQEA DNYGQREGES DDYETIEGHD  660
YKSEDENAYE DDEDFDDDDD FARKVGVVFS *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1338342RKRRR
2338343RKRRRS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.105890.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G261800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9710090.0EU971009.1 Zea mays clone 355753 zinc finger C-x8-C-x5-C-x3-H type family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002448746.10.0zinc finger CCCH domain-containing protein 32
SwissprotQ0J9520.0C3H32_ORYSJ; Zinc finger CCCH domain-containing protein 32
TrEMBLC5YA510.0C5YA51_SORBI; Uncharacterized protein
STRINGSb06g032480.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66043241
Representative plantOGRP24551220
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]