PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G261200.1.p
Common NameSb06g032410, SORBIDRAFT_06g032410
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family Trihelix
Protein Properties Length: 388aa    MW: 41381.5 Da    PI: 10.1192
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G261200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix575.2e-1878167271
              trihelix   2 WtkqevlaLiearremeerlrrgk....................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 
                           Wt qe+l Li+a+r +++r   g                     +++++W++v ++++ +g+ rs++qC++kw+nl ++ykk+++ e++
  Sobic.006G261200.1.p  78 WTLQETLILITAKRLDDDRRAGGGhghhghgvppavagspttprSAEQRWKWVENYCWNHGCLRSQNQCNDKWDNLLRDYKKVRDYESR 166
                           **************666666554345566667777777777777*****************************************9987 PP

              trihelix  71 r 71 
                            
  Sobic.006G261200.1.p 167 A 167
                           5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.59770154IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.4E-671156IPR009057Homeodomain-like
PfamPF138376.3E-1177166No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MSANTVAKAA AAPMTPAASS DPSPSSSSGA GASPSPLALL RPHQYPHGHG HMTPPSPALT  60
APPPSPASAP RDYRKGNWTL QETLILITAK RLDDDRRAGG GHGHHGHGVP PAVAGSPTTP  120
RSAEQRWKWV ENYCWNHGCL RSQNQCNDKW DNLLRDYKKV RDYESRAAAV TAPATAAPAR  180
GLPSYWAMER PERKDRNLPT NLAPEVFDAL TDVLSRRAAR RGGAAIAAAP PPPLALPPPP  240
PPPSPPKPLL VQPRAPPPPP PLPLPAVAMA PPATSVSAEE LTGSSESGED GSDGGEPEPK  300
RRRLNRLGSS VVRSATVLAR TLVACEEKRE RRHREVLELE ERRLRLEEER TEVRRQGFAG  360
LVSAVNSLSS AIHALVSDHR SGDSASR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1299303KRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G261200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0668720.0BT066872.1 Zea mays full-length cDNA clone ZM_BFb0081B07 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002448740.20.0trihelix transcription factor ASR3
TrEMBLA0A1B6PNZ90.0A0A1B6PNZ9_SORBI; Uncharacterized protein
STRINGSb06g032410.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32943571
Representative plantOGRP18811637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31310.11e-41Trihelix family protein