PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G256500.1.p
Common NameSb06g032000, SORBIDRAFT_06g032000
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C3H
Protein Properties Length: 307aa    MW: 31941.9 Da    PI: 9.9599
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G256500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.84.4e-09106131227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                           kt+ C  +  t  Ck+Gd+C+FaH++
  Sobic.006G256500.1.p 106 KTRMCTKYNTTEGCKFGDKCHFAHSE 131
                           9***********************95 PP
2zf-CCCH36.96.3e-12273298127
                           --S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                           ykt+lC +f + G C +GdrC+FaHg+
  Sobic.006G256500.1.p 273 YKTKLCENFVK-GACTFGDRCHFAHGE 298
                           9**********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.4E-73562IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.3243765IPR000571Zinc finger, CCCH-type
SMARTSM003564.13764IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-53862IPR000571Zinc finger, CCCH-type
PfamPF146081.54562No hitNo description
Gene3DG3DSA:4.10.1000.108.4E-14103136IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-8103135IPR000571Zinc finger, CCCH-type
SMARTSM003560.051104131IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582104132IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-5106131IPR000571Zinc finger, CCCH-type
SuperFamilySSF547913.21E-14165243IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.102.1E-15172242IPR004088K Homology domain, type 1
SMARTSM003223.1E-11172242IPR004087K Homology domain
PROSITE profilePS5008415.179173237IPR004088K Homology domain, type 1
CDDcd001053.16E-14175237No hitNo description
PfamPF000136.7E-11175238IPR004088K Homology domain, type 1
SuperFamilySSF902294.45E-9271302IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-14271302IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-8272298IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.103272299IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-9273298IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MEGAGAARKR SRPESANGYA AGGKRSKDTE SFQTGQSSKS KPCTKFFSTI GCPFGEGCHF  60
LHFVPGGYPA VAKMLNLGSP AVSAPSRTHV DHAALTGASH QASMGKTRMC TKYNTTEGCK  120
FGDKCHFAHS ERELGKPAYM SHEGPPMGGR YGGRPEPLQQ ASMGPPAGNF GASATAKISV  180
DASLAGGIIG KGGVNTKQIS RVTGVKLSIR DHESNPSQKN IELEGNFDQI KQASDMVRDL  240
IATISASMPA KNLSASAAPA GGRGGGLGGR SNYKTKLCEN FVKGACTFGD RCHFAHGETE  300
QRRGAA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.206040.0embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G256500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9744520.0EU974452.1 Zea mays clone 449633 zinc finger C-x8-C-x5-C-x3-H type family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002447282.10.0zinc finger CCCH domain-containing protein 31
SwissprotQ7XPK11e-152C3H31_ORYSJ; Zinc finger CCCH domain-containing protein 31
TrEMBLC5Y9Z90.0C5Y9Z9_SORBI; Uncharacterized protein
STRINGSb06g032000.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Representative plantOGRP10261756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.12e-50C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]