PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.006G256200.5.p | ||||||||
Common Name | Sb06g031970, SORBIDRAFT_06g031970 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | G2-like | ||||||||
Protein Properties | Length: 473aa MW: 51076 Da PI: 6.7898 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 85.9 | 4e-27 | 274 | 338 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGse..........kAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++LHerFv++v+qLGG++ +AtPk il+lm+ +gLt++h+kSHLQkYR+ Sobic.006G256200.5.p 274 KTRIRWTQDLHERFVDCVNQLGGADifscccvtlaEATPKGILKLMNSDGLTIYHIKSHLQKYRI 338 68*********************9755555555558****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.16E-14 | 272 | 338 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.9E-27 | 273 | 339 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.6E-18 | 274 | 339 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.3E-8 | 278 | 337 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 2.3E-21 | 368 | 414 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 473 aa Download sequence Send to blast |
MMNAKKIKLH DYHRYGSPLC DPQLFPATAA AGLPFHPAPG LVGSLPQPHG GGWVHEEHTT 60 TTPRSVLATQ GLQGGSCVGS DAAAFFAAEE LMMGMPRFDC PLGGTPPPLP DLTAFAKRPP 120 FGRPTTEAEQ LYHRRPVDPL PIRDGSVRTY YVQPQQRDGA TEAPPSLELP FQRRQQQQQQ 180 QQQERVHGLF GNASAGRLLG GTGGEPKAHS FPAHQVAPST LLPVMEAPAV MQQSPMENLL 240 SRSCSIIGAA ATHVGSGNAV AAAAAAPGQG APSKTRIRWT QDLHERFVDC VNQLGGADIF 300 SCCCVTLAEA TPKGILKLMN SDGLTIYHIK SHLQKYRIAK YMPASTSEGK QEKRAAGNDV 360 QNLDPTGMKI TEALRFQLDV QMRLHEQLEI QRNLQLRIEE QGKKLQKMLE EQMKVSRTVM 420 EPQQGAAAAA AAAFLGVGER DEEEVEDAFD DVQEQLLAAM ASSDAGFQSK IS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 4e-19 | 274 | 341 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 4e-19 | 274 | 341 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 4e-19 | 274 | 341 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 4e-19 | 274 | 341 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.006G256200.5.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT068513 | 1e-119 | BT068513.1 Zea mays full-length cDNA clone ZM_BFb0272J03 mRNA, complete cds. | |||
GenBank | EU957486 | 1e-119 | EU957486.1 Zea mays clone 1594418 transfactor mRNA, complete cds. | |||
GenBank | KJ726831 | 1e-119 | KJ726831.1 Zea mays clone pUT3371 G2-like transcription factor (GLK52) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021318354.1 | 0.0 | uncharacterized protein LOC8070283 isoform X1 | ||||
Refseq | XP_021318355.1 | 0.0 | uncharacterized protein LOC8070283 isoform X1 | ||||
TrEMBL | A0A1Z5RFK4 | 0.0 | A0A1Z5RFK4_SORBI; Uncharacterized protein | ||||
STRING | Sb06g031970.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6933 | 37 | 51 | Representative plant | OGRP78 | 17 | 262 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06800.1 | 4e-58 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.006G256200.5.p |
Entrez Gene | 8070283 |