PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.006G255300.1.p | ||||||||
Common Name | Sb06g031900, SORBIDRAFT_06g031900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | ARF | ||||||||
Protein Properties | Length: 947aa MW: 103750 Da PI: 6.2128 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.6 | 1.2e-23 | 143 | 244 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f+k lt sd++++g +++p++ ae+ ++++++ ++l+++d++ + W++++iyr++++r++lt+GW+ Fv a++Lk+gD+v+F Sobic.006G255300.1.p 143 FCKNLTASDTSTHGGFSVPRRAAEKLfpqldySMQPPN-QELIVRDLHDNMWTFRHIYRGQPKRHLLTTGWSLFVGAKRLKAGDSVLFI 230 89*********************999*****9555555.49************************************************ PP E-SSSEE..EEEEE-S CS B3 84 ldgrsefelvvkvfrk 99 ++++ +l+v+v+r+ Sobic.006G255300.1.p 231 --RDEKSQLLVGVRRA 244 ..4577778*****97 PP | |||||||
2 | Auxin_resp | 110.3 | 2e-36 | 269 | 351 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaas++ F+++YnPr+s+s Fv+++++++ka++ + svGmRf m+fete+s +rr++Gt+vg+sd+dp+rWpnSkWr+L+ Sobic.006G255300.1.p 269 AAHAASSGGSFTIYYNPRTSPSPFVIPLARYNKATYLQPSVGMRFAMMFETEESIKRRCTGTIVGISDYDPMRWPNSKWRNLQ 351 79*******************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 8.63E-45 | 133 | 272 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.1E-41 | 136 | 257 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.02E-21 | 142 | 243 | No hit | No description |
Pfam | PF02362 | 3.4E-21 | 143 | 244 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.1E-23 | 143 | 245 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.83 | 143 | 245 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.9E-32 | 269 | 351 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 23.418 | 843 | 927 | IPR000270 | PB1 domain |
Pfam | PF02309 | 7.6E-9 | 845 | 930 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 4.38E-8 | 862 | 922 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0010305 | Biological Process | leaf vascular tissue pattern formation | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048507 | Biological Process | meristem development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 947 aa Download sequence Send to blast |
MASAQEKATS GVLRNAAALL DEMQLMGETQ GAKKVINSEL WHACAGPLVC LPQRGSLVYY 60 FPQGHSEQVA ATTKKIPNSR IPNYPSLPSQ LLCQVHNITL HADKETDEIY AQMTLQPVHS 120 ETDVFPIPSL GAYTKSKHPT EYFCKNLTAS DTSTHGGFSV PRRAAEKLFP QLDYSMQPPN 180 QELIVRDLHD NMWTFRHIYR GQPKRHLLTT GWSLFVGAKR LKAGDSVLFI RDEKSQLLVG 240 VRRATRQQPA LSSSVLSTDS MHIGVLAAAA HAASSGGSFT IYYNPRTSPS PFVIPLARYN 300 KATYLQPSVG MRFAMMFETE ESIKRRCTGT IVGISDYDPM RWPNSKWRNL QVEWDEHGYG 360 ERPERVSLWD IETPENMVFP SPLNSKRQCL PSYAVPGLQI GSVNMSSIPR AQGSPFGNLQ 420 QMPGSGSDLA LLLLNQSGQN LGSPIACQQS SFSSIIQNAK HSYFPPSTFG ASTGSMKQET 480 MPSNEAPQQL NALGIQKGDQ VSCEVQPGID SISAREMSVK PRGPRSTDSY SSQSISDQNG 540 KGEPRTKSRR SKKSSSHKTI SDKSELSSLP SQICDKQRHG SEPTLVDCGA EQATCGNIED 600 SSGAPTRGDF AGELQVLEVE QHELLSPPKL ESSKSPDGGK SVSSFPNQGC FSQFLEGLDW 660 MIPPSYYQDS NGIQSATASD NIFNPSEGIP SAMNTDGMEA FQTSCLSECF PNSIQEFINS 720 PDINTLTFMS PEMQHLDAQH DGSNLPSTSN SYVQMSFSEE SQSASLSGLH MEAIHINSSC 780 SQPLATGSFD AGTFSKLSNM KECQALPLQE IHNGSMGTPS CSMDAAAEYS MDRSVKPMKP 840 PVRTYTKVQK LGSVGRSIDV TRFRDYHELR SAIACMFGLQ GKLEHPGGSD WKLVYVDYEN 900 DVLLVGDDPW EEFINCVRCI RILSPSEVQQ MSENGVHVLN DCIQIA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 0.0 | 17 | 374 | 31 | 390 | Auxin response factor 5 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.12926 | 0.0 | callus |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00153 | DAP | Transfer from AT1G19850 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.006G255300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT066632 | 0.0 | BT066632.1 Zea mays full-length cDNA clone ZM_BFb0041D15 mRNA, complete cds. | |||
GenBank | JX428506 | 0.0 | JX428506.1 Zea mays subsp. mays clone pUT3104 ARF4 transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002448710.1 | 0.0 | auxin response factor 11 isoform X1 | ||||
Swissprot | Q01K26 | 0.0 | ARFK_ORYSI; Auxin response factor 11 | ||||
Swissprot | Q8S983 | 0.0 | ARFK_ORYSJ; Auxin response factor 11 | ||||
TrEMBL | C5Y9Z0 | 0.0 | C5Y9Z0_SORBI; Auxin response factor | ||||
STRING | Sb06g031900.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8673 | 32 | 41 | Representative plant | OGRP8260 | 12 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19850.1 | 0.0 | ARF family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.006G255300.1.p |
Entrez Gene | 8082556 |
Publications ? help Back to Top | |||
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