PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.006G247700.1.p

Common Name

Sb06g031290, SORBIDRAFT_06g031290

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

SBP

Protein Properties

Length: 401aa MW: 43508.1 Da PI: 7.8313

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.006G247700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.7	2.2e-40	177	255	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EE.ETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvl.vsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+egC+adls+ak+yhrrhkvCe+hskapvv+ + gl+qrfCqqCsrfh l+efD++k+sCr+rLa+hn+rrrk+++ Sobic.006G247700.1.p 177 RCQAEGCKADLSSAKRYHRRHKVCEHHSKAPVVVtAGGLHQRFCQQCSRFHLLDEFDDAKKSCRKRLADHNRRRRKSKP 255 6****************************98725689***********************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	9.8E-34	172	240	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	30.291	175	253	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	5.36E-37	176	256	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	8.1E-31	178	252	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence Send to blast
MMNLSAAANA ACDEFPYVPS NAGAAPPSLL PIMDQENSIQ REHHHQLGYN LEANSLALLP 60 PSNAAAAHHH HHHATTIAGH SPHDILQFYP ASASHYLASG GGGGNPYSHF GSAGTGSTFH 120 QSSYYPPAAP EYYFPTLVSS AEENMASFAA TQLGLNLNYR TYFPPRGGYT YGHHPPRCQA 180 EGCKADLSSA KRYHRRHKVC EHHSKAPVVV TAGGLHQRFC QQCSRFHLLD EFDDAKKSCR 240 KRLADHNRRR RKSKPSDADA GDKKRAHGNK AAAAKDKAGS SSKNMDIGDG LGTQILGSAL 300 LSKEQDQAMD LGEVVKEAVD PKGKASMQQH HGIHQQHHGF PFHSSSAGSC FPQTQAVSSD 360 TTSNIAQVQE PSLGFHHQHH HQHSNILQLG QAMFDLDFDH *

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence Send to blast

MMNLSAAANA ACDEFPYVPS NAGAAPPSLL PIMDQENSIQ REHHHQLGYN LEANSLALLP  60
PSNAAAAHHH HHHATTIAGH SPHDILQFYP ASASHYLASG GGGGNPYSHF GSAGTGSTFH  120
QSSYYPPAAP EYYFPTLVSS AEENMASFAA TQLGLNLNYR TYFPPRGGYT YGHHPPRCQA  180
EGCKADLSSA KRYHRRHKVC EHHSKAPVVV TAGGLHQRFC QQCSRFHLLD EFDDAKKSCR  240
KRLADHNRRR RKSKPSDADA GDKKRAHGNK AAAAKDKAGS SSKNMDIGDG LGTQILGSAL  300
LSKEQDQAMD LGEVVKEAVD PKGKASMQQH HGIHQQHHGF PFHSSSAGSC FPQTQAVSSD  360
TTSNIAQVQE PSLGFHHQHH HQHSNILQLG QAMFDLDFDH *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	7e-27	178	252	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	247	264	RRRRKSKPSDADAGDKKR
2	248	253	RRRKSK

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Developing leaves. Present at highest levels in very young ligules and auricles. Present pre- and post-ligule and auricle development.
Uniprot	TISSUE SPECIFICITY: Leaf ligular region, blade and sheath.

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the formation of ligules and auricles during leaf organogenesis.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.006G247700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	ZMU89496	0.0	U89496.1 Zea mays liguleless1 protein (liguleless1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002447251.1	0.0	protein LIGULELESS 1
Swissprot	O04003	0.0	LG1_MAIZE; Protein LIGULELESS 1
TrEMBL	C5Y9I5	0.0	C5Y9I5_SORBI; Uncharacterized protein
STRING	Sb06g031290.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6990	34	52
Representative plant	OGRP97	17	230

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02065.1	2e-41	squamosa promoter binding protein-like 8

Link Out ? help Back to Top
Phytozome	Sobic.006G247700.1.p
Entrez Gene	8079612

Publications ? help Back to Top
Sylvester AW,Cande WZ,Freeling M Division and differentiation during normal and liguleless-1 maize leaf development. Development, 1990. 110(3): p. 985-1000 [PMID:2088734]