PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.006G247000.1.p | ||||||||
Common Name | Sb06g031230, SORBIDRAFT_06g031230 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | ERF | ||||||||
Protein Properties | Length: 173aa MW: 18628.7 Da PI: 6.3564 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.1 | 2.1e-18 | 6 | 55 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g+Wv+eIr+p +r++lg++ tae+Aa+a+++a++ + g Sobic.006G247000.1.p 6 RFRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTYETAEDAARAYDEAARLMSG 55 69******9.**********8.....334**********************98766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.75E-30 | 5 | 65 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.6E-33 | 6 | 64 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.6E-38 | 6 | 69 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.85 | 6 | 63 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.9E-20 | 6 | 65 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.4E-11 | 6 | 53 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-10 | 7 | 18 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-10 | 29 | 45 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MPKLQRFRGV RQRHWGSWVS EIRHPLLKTR IWLGTYETAE DAARAYDEAA RLMSGPAART 60 NFPLSVSGGG GTLSPTLRAK LEKCCTAPAQ EPQHGADVSR TGGGVGRDDV DGSSRKEVQA 120 AVKVDPDADD PDGEEYIEEM IRELTYYGPV EIQQHHPPSA SSAAAASSSA IR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-17 | 3 | 69 | 2 | 69 | ATERF1 |
3gcc_A | 2e-17 | 3 | 69 | 2 | 69 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.006G247000.1.p |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK108355 | 2e-49 | AK108355.1 Oryza sativa Japonica Group cDNA clone:002-142-C04, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002448671.1 | 1e-124 | ethylene-responsive transcription factor ERF003 | ||||
Swissprot | Q94AW5 | 2e-43 | ERF03_ARATH; Ethylene-responsive transcription factor ERF003 | ||||
TrEMBL | C5Y9H9 | 1e-123 | C5Y9H9_SORBI; Uncharacterized protein | ||||
STRING | Sb06g031230.1 | 1e-124 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1418 | 35 | 118 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25190.1 | 6e-27 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.006G247000.1.p |
Entrez Gene | 8070251 |
Publications ? help Back to Top | |||
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