PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sobic.006G240500.1.p | ||||||||
Common Name | Sb06g030660, SORBIDRAFT_06g030660 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 256aa MW: 27583.6 Da PI: 9.9345 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.4 | 2.6e-16 | 74 | 123 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr +k +g+WvAeIr+p + r+r++lg++ ta Aa+a++ a +l+g Sobic.006G240500.1.p 74 QYRGVRMRK-WGKWVAEIREPHK---RTRIWLGSYATAVAAARAYDTAVFYLRG 123 69*****99.**********732...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.9E-30 | 73 | 132 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.30E-21 | 74 | 132 | No hit | No description |
SuperFamily | SSF54171 | 1.37E-21 | 74 | 133 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.734 | 74 | 131 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.3E-10 | 74 | 123 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.5E-36 | 74 | 137 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.9E-12 | 75 | 86 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.9E-12 | 113 | 133 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 256 aa Download sequence Send to blast |
MQGEYRSSSE ESAAAAAAAA AAAAAAAMAP LAAAAAAAVK MEAEQAAMAA AGAAGPQLGS 60 AHQHHQQQMQ PRRQYRGVRM RKWGKWVAEI REPHKRTRIW LGSYATAVAA ARAYDTAVFY 120 LRGRSARLNF PDEIPSLSLS EGERGDGETD PAADGGGAGT LSAASIRKKA IEVGSRVDAL 180 QTGMMVPPPH HRERQRHHHH HHHHHHLPQL RVHAHAEEEH HQQEQKPSPQ RPAWSGRVKN 240 PDLNRAPSPE SSDAE* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-15 | 73 | 136 | 4 | 68 | ATERF1 |
3gcc_A | 5e-15 | 73 | 136 | 4 | 68 | ATERF1 |
5wx9_A | 2e-14 | 74 | 133 | 14 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00276 | DAP | Transfer from AT2G23340 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sobic.006G240500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KJ727878 | 0.0 | KJ727878.1 Zea mays clone pUT5971 AP2-EREBP transcription factor (EREB47) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002448639.2 | 0.0 | ethylene-responsive transcription factor ERF008 | ||||
TrEMBL | A0A1B6PNK7 | 1e-180 | A0A1B6PNK7_SORBI; Uncharacterized protein | ||||
STRING | Sb06g030660.1 | 1e-178 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3943 | 30 | 75 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G23340.1 | 2e-27 | DREB and EAR motif protein 3 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sobic.006G240500.1.p |
Entrez Gene | 8068483 |