PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sobic.006G218300.2.p | ||||||||
Common Name | Sb06g028800, SORBIDRAFT_06g028800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 310aa MW: 33529.5 Da PI: 7.3228 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 162.1 | 2.1e-50 | 11 | 154 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.....leleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 lppGfrFhP+d+elv +yL++k++gk + + + +vd++k+ePwdLp ++ + +ewyfFs +d+kyatg+r+nrat+sgyW Sobic.006G218300.2.p 11 LPPGFRFHPRDDELVLDYLCRKLSGKGgggggASYGGIaMVDVDLNKCEPWDLPGEACVGGREWYFFSLHDRKYATGQRTNRATRSGYW 99 79************************988887444334499*************7666789**************************** PP NAM 84 katgkdkevlsk..........kgelvglkktLvfykgrapkgektdWvmheyrl 128 katgkd+++ + g+lvg++ktLvfy+grap+g+kt+Wvmhe+r+ Sobic.006G218300.2.p 100 KATGKDRPISISgrrrggggngAGALVGMRKTLVFYQGRAPRGTKTEWVMHEFRV 154 **********9866655555444444***************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.31E-56 | 3 | 179 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.561 | 11 | 179 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-25 | 12 | 154 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 310 aa Download sequence Send to blast |
MSLISMMEAR LPPGFRFHPR DDELVLDYLC RKLSGKGGGG GGASYGGIAM VDVDLNKCEP 60 WDLPGEACVG GREWYFFSLH DRKYATGQRT NRATRSGYWK ATGKDRPISI SGRRRGGGGN 120 GAGALVGMRK TLVFYQGRAP RGTKTEWVMH EFRVDGPAVA DRPGSPLQED WVLCRVFYKS 180 RTTTTRPAAG PDEAGPLSSE LIGLPMPQMA PAGDAYLSFD NTPAADGGYY YHHQDADLAD 240 AHHHLPLPAS SLSSFRDLLS SMVEGSDAAV RGTTELHLQG WTEAAYAQQQ GGVMSSHSQQ 300 TWNPFLSSG* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-51 | 6 | 179 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-51 | 6 | 179 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-51 | 6 | 179 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-51 | 6 | 179 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-51 | 6 | 180 | 15 | 169 | NAC domain-containing protein 19 |
3swm_B | 6e-51 | 6 | 180 | 15 | 169 | NAC domain-containing protein 19 |
3swm_C | 6e-51 | 6 | 180 | 15 | 169 | NAC domain-containing protein 19 |
3swm_D | 6e-51 | 6 | 180 | 15 | 169 | NAC domain-containing protein 19 |
3swp_A | 6e-51 | 6 | 180 | 15 | 169 | NAC domain-containing protein 19 |
3swp_B | 6e-51 | 6 | 180 | 15 | 169 | NAC domain-containing protein 19 |
3swp_C | 6e-51 | 6 | 180 | 15 | 169 | NAC domain-containing protein 19 |
3swp_D | 6e-51 | 6 | 180 | 15 | 169 | NAC domain-containing protein 19 |
4dul_A | 5e-51 | 6 | 179 | 12 | 165 | NAC domain-containing protein 19 |
4dul_B | 5e-51 | 6 | 179 | 12 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sobic.006G218300.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU968752 | 0.0 | EU968752.1 Zea mays clone 323927 NAC domain-containing protein 21/22 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002447109.1 | 0.0 | NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A1Z5RG65 | 0.0 | A0A1Z5RG65_SORBI; Uncharacterized protein | ||||
STRING | Sb06g028800.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1012 | 37 | 138 | Representative plant | OGRP19852 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G56010.2 | 3e-72 | NAC domain containing protein 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sobic.006G218300.2.p |
Entrez Gene | 8074719 |