PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.006G217500.2.p | ||||||||
Common Name | Sb06g028730, SORBIDRAFT_06g028730 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | B3 | ||||||||
Protein Properties | Length: 229aa MW: 25681.5 Da PI: 9.4244 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.1 | 2.5e-16 | 129 | 220 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f++ +++s+v++ +l lp f+++h k+ e++tl++ de+g + + + kk + l++GWkeF+ +++L +gD +vF+l+++++ Sobic.006G217500.2.p 129 FIQPMIQSHVTRGFWLGLPTYFCRKHLPKSDETITLVV-DEEGDESDTLYL-AKKA-G--LSTGWKEFAIEHKLHDGDCLVFQLIEQTK 212 8899**********************444445556665.566666565552.3333.3..9***********************98777 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 f +v ++r+ Sobic.006G217500.2.p 213 F--KVYIIRA 220 7..9999886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 7.85E-21 | 123 | 221 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 8.3E-20 | 124 | 221 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.37E-23 | 127 | 219 | No hit | No description |
PROSITE profile | PS50863 | 11.321 | 129 | 221 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.3E-17 | 129 | 221 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.2E-14 | 129 | 220 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MAEAVAVAVA VAYEAQRQRQ VEANKRKLDE LQLHRLSAAV REAAAAAKPS PAKKWKARVP 60 RDGAAAGVEP LRRSGRLADL PEKPVYYQVR VKKLLKYNAR VPLDAAERSY AISKAEELVQ 120 DLGSSFPIFI QPMIQSHVTR GFWLGLPTYF CRKHLPKSDE TITLVVDEEG DESDTLYLAK 180 KAGLSTGWKE FAIEHKLHDG DCLVFQLIEQ TKFKVYIIRA TSYFESEH* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.006G217500.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT041782 | 1e-145 | BT041782.1 Zea mays full-length cDNA clone ZM_BFb0054E02 mRNA, complete cds. | |||
GenBank | BT061745 | 1e-145 | BT061745.2 Zea mays full-length cDNA clone ZM_BFb0179F08 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002448540.1 | 1e-168 | B3 domain-containing protein Os06g0194400 | ||||
Swissprot | Q69V36 | 4e-87 | Y6944_ORYSJ; B3 domain-containing protein Os06g0194400 | ||||
TrEMBL | A0A1Z5RF03 | 1e-166 | A0A1Z5RF03_SORBI; Uncharacterized protein | ||||
STRING | Sb06g028730.1 | 1e-167 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1756 | 38 | 103 | Representative plant | OGRP995 | 16 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 4e-42 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.006G217500.2.p |
Entrez Gene | 8066792 |
Publications ? help Back to Top | |||
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