PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.006G213900.1.p | ||||||||
Common Name | Sb06g028420, SORBIDRAFT_06g028420 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 258aa MW: 29790 Da PI: 9.338 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 84.2 | 7.8e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien +nrqvtfskRr g++KKA+EL +LCda++ viifs +g++yeyss Sobic.006G213900.1.p 9 KKIENPTNRQVTFSKRRMGLFKKANELAILCDAQIGVIIFSGSGRMYEYSS 59 68***********************************************96 PP | |||||||
2 | K-box | 48.2 | 4.8e-17 | 85 | 159 | 14 | 87 |
K-box 14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnelll.eqieelqkkekel 87 +++ qe++++k+e + L+ +++GedL + s+++L +Leqq+e sl k+R +K+ell +q+ e +++e + Sobic.006G213900.1.p 85 QQKIIQEMTRMKDERNRLRMIMAQYMGEDLATFSVQDLSNLEQQIEFSLYKVRLRKQELLDhQQLLEIRQREMHI 159 68899*******************************************************625678888888765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.357 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.4E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.33E-30 | 2 | 79 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.75E-39 | 2 | 76 | No hit | No description |
PRINTS | PR00404 | 1.4E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.0E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.9E-13 | 81 | 160 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 11.126 | 85 | 186 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MGRGKVELKK IENPTNRQVT FSKRRMGLFK KANELAILCD AQIGVIIFSG SGRMYEYSSP 60 PWRIASIFDR YLKAPSTRFE EMDIQQKIIQ EMTRMKDERN RLRMIMAQYM GEDLATFSVQ 120 DLSNLEQQIE FSLYKVRLRK QELLDHQQLL EIRQREMHIP GEQSGYLCLM NQAIARGQQQ 180 QQAQAGEMAG INQRPFPWWD VGASGSGSQS QQQQLPGRDA AESSMTALQL SPQLHEYRLQ 240 PRQPNLQQDA NVHGWLW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 1e-16 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
6byy_B | 1e-16 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
6byy_C | 1e-16 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
6byy_D | 1e-16 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.006G213900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT038532 | 0.0 | BT038532.1 Zea mays full-length cDNA clone ZM_BFb0284C04 mRNA, complete cds. | |||
GenBank | BT069133 | 0.0 | BT069133.1 Zea mays full-length cDNA clone ZM_BFb0202H05 mRNA, complete cds. | |||
GenBank | HQ858737 | 0.0 | HQ858737.1 Zea mays clone UT1435 MADS transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002447090.2 | 0.0 | MADS-box transcription factor 31 | ||||
Swissprot | Q84NC2 | 2e-89 | MAD31_ORYSJ; MADS-box transcription factor 31 | ||||
TrEMBL | A0A1Z5REZ9 | 0.0 | A0A1Z5REZ9_SORBI; Uncharacterized protein | ||||
STRING | Sb06g028420.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1850 | 37 | 100 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23260.2 | 1e-40 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.006G213900.1.p |
Entrez Gene | 8063965 |
Publications ? help Back to Top | |||
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