PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.006G202300.1.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

G2-like

Protein Properties

Length: 273aa MW: 30045.3 Da PI: 9.6464

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.006G202300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.3	8.5e-34	17	71	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWtp+LH+rFveav++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl Sobic.006G202300.1.p 17 KPRLRWTPDLHQRFVEAVTRLGGPDKATPKSVLRLMGIKGLTLYHLKSHLQKYRL 71 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.0E-32	14	72	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.188	14	74	IPR017930	Myb domain
SuperFamily	SSF46689	5.73E-17	17	74	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.2E-24	17	71	IPR006447	Myb domain, plants
Pfam	PF00249	1.7E-9	19	70	IPR001005	SANT/Myb domain
Pfam	PF14379	5.1E-21	115	158	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MLRGSYGCGG AASRDPKPRL RWTPDLHQRF VEAVTRLGGP DKATPKSVLR LMGIKGLTLY 60 HLKSHLQKYR LGIQGKKSTG LELATGGVFS QGLSSTTAHP PGVPDEGKST REIALSNALR 120 YQIQVQRKLQ EQIEVQKKLQ MRIEAQGKYL KTILEKAQTN ISFDTDASNG IESTRSQLMG 180 LNQALSGFMD NATQVCKENR KQLVKALSDD NDKDNLGFQL YHVGSQEAKE VKCTPKTEDS 240 LLLDLNIEGG YDLSSRGMQA CELELKINQQ IG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	6e-21	17	70	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	6e-21	17	70	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	6e-21	17	70	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	6e-21	17	70	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.006G202300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX469979	0.0	JX469979.1 Zea mays subsp. mays clone UT3339 G2-like transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021318852.1	0.0	myb family transcription factor PHL11
Refseq	XP_021318853.1	0.0	myb family transcription factor PHL11
TrEMBL	A0A1B6PN06	0.0	A0A1B6PN06_SORBI; Uncharacterized protein
STRING	GRMZM2G125704_P02	1e-168	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3940	34	70
Representative plant	OGRP78	17	262

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	5e-60	G2-like family protein

Link Out ? help Back to Top
Phytozome	Sobic.006G202300.1.p