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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Sobic.006G201600.1.p |
| Common Name | Sb06g027340, SORBIDRAFT_06g027340 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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| Family |
LFY |
| Protein Properties |
Length: 392aa MW: 42338.1 Da PI: 9.4351 |
| Description |
LFY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sobic.006G201600.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | FLO_LFY | 536.6 | 9.1e-164 | 1 | 377 | 1 | 386 |
FLO_LFY 1 mdpea.fsas.lfkwd..praaaaapparlleeaavseapleaaaaaaarklreleelfkayGvryltvakiaelGftvstLvdmkdee 85
mdp++ fsa+ f+wd p a aa+pp + a +++++l +a + rele+l+ +yGvr +tva+i+elGft+stL++m+++e
Sobic.006G201600.1.p 1 MDPNDaFSAAhPFRWDlgPPAHAAPPPPPPPQPAPAPAPQLPPHAPLVYAAPRELEDLVAGYGVRPSTVARISELGFTASTLLGMTERE 89
777654876659****884444444444444455555555567777778889************************************* PP
FLO_LFY 86 lddlmkslseifrldllvGeryGikaavraerrrleeeeaekkrrkllsedeetaldalsqeglseepvqeekeaagsggeglgeaelv 174
ldd+m++l+ +fr+d+l+Ger+G++aa+raer r+++ r ++ ++lda+sqe+ls+e++ aa+sgg+ ++ + +
Sobic.006G201600.1.p 90 LDDMMAALAGLFRWDVLLGERFGLRAALRAERGRVMSLG---GRF-----HTGSTLDAASQEVLSDERD-----AAASGGTVMAGK--K 163
************************************955...555.....36789***********977.....556655552222..2 PP
FLO_LFY 175 aaeekkseeekkkaskkkqkrkkkkelkseededee...eeededeegsgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCr 260
+ + k ++k k++++k++ + + l e+d de+ +e+++++ +g++g erqrehPf+vtepgevar+kknGLDYLf+LyeqCr
Sobic.006G201600.1.p 164 KGN-KGVGSRKGKKARRKKELRPLDVLGDENDGDEDgggGSESTESSAGGSGGGERQREHPFVVTEPGEVARAKKNGLDYLFHLYEQCR 251
222.12222222222222222333322222333332111455556666889999*********************************** PP
FLO_LFY 261 efLlqvqkiakerGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaa 349
fLlqvq+iak G+k+Ptkvtnqvfryakk+gasyinkPkmrhYvhCYalhcLdeeasnalrra+k+rgenvGawrqacy+plv+iaa
Sobic.006G201600.1.p 252 VFLLQVQSIAKLGGHKSPTKVTNQVFRYAKKCGASYINKPKMRHYVHCYALHCLDEEASNALRRAYKARGENVGAWRQACYAPLVEIAA 340
***************************************************************************************** PP
FLO_LFY 350 rqgwdidavfnahprLsiWYvPtkLrqLChlerskas 386
r+g+didavf+ahprL+iWYvPt+LrqLCh++r +++
Sobic.006G201600.1.p 341 RHGFDIDAVFAAHPRLAIWYVPTRLRQLCHQARGNHA 377
*********************************9886 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0010077 | Biological Process | maintenance of inflorescence meristem identity |
| GO:0010582 | Biological Process | floral meristem determinacy |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0031490 | Molecular Function | chromatin DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0043621 | Molecular Function | protein self-association |
| Sequence ? help Back to Top |
| Protein Sequence Length: 392 aa
Download sequence Send
to blast |
MDPNDAFSAA HPFRWDLGPP AHAAPPPPPP PQPAPAPAPQ LPPHAPLVYA APRELEDLVA 60
GYGVRPSTVA RISELGFTAS TLLGMTEREL DDMMAALAGL FRWDVLLGER FGLRAALRAE 120
RGRVMSLGGR FHTGSTLDAA SQEVLSDERD AAASGGTVMA GKKKGNKGVG SRKGKKARRK 180
KELRPLDVLG DENDGDEDGG GGSESTESSA GGSGGGERQR EHPFVVTEPG EVARAKKNGL 240
DYLFHLYEQC RVFLLQVQSI AKLGGHKSPT KVTNQVFRYA KKCGASYINK PKMRHYVHCY 300
ALHCLDEEAS NALRRAYKAR GENVGAWRQA CYAPLVEIAA RHGFDIDAVF AAHPRLAIWY 360
VPTRLRQLCH QARGNHAHVH AAAGFPPPPM F*
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| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 161 | 180 | KKKGNKGVGSRKGKKARRKK |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: In the vegetative phase, expressed in shoot meristems and leaf primordia. In the reproductive phase, present in the meristems of primary and secondary branches at primordial and elongating stages, but later transiently down-regulated from the meristems, when the meristem identity change from inflorescence to spikelet. Subsequent expression recovery when spikelets are differentiated, with an accumulation in floral meristems and in primordia of all floral organs, including lodicules, stamens, carpels and ovules. {ECO:0000269|PubMed:21910771}. |
| Uniprot | TISSUE SPECIFICITY: In very young panicle but not in mature florets, mature leaves, roots or apical meristems. {ECO:0000269|PubMed:9482818}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor (By similarity). Together with APO1, involved in the temporal regulation of meristem size and identity during both vegetative and reproductive developments through interaction with APO1 (PubMed:21910771). Promotes flowering (PubMed:21910771). {ECO:0000250|UniProtKB:Q00958, ECO:0000269|PubMed:21910771}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AY179882 | 0.0 | AY179882.1 Zea mays cultivar A632 floricaula/leafy-like 1 (fl1) mRNA, complete cds. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT5G61850.1 | 7e-99 | floral meristem identity control protein LEAFY (LFY) |
