PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G201000.1.p
Common NameSb06g027290, SORBIDRAFT_06g027290
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 506aa    MW: 52721.8 Da    PI: 5.3194
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G201000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.58.6e-31250308259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  Sobic.006G201000.1.p 250 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 308
                           699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.925244310IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-30247310IPR003657WRKY domain
SuperFamilySSF1182903.79E-26248310IPR003657WRKY domain
SMARTSM007741.4E-37249309IPR003657WRKY domain
PfamPF031061.1E-25251308IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MCDYFLPRME GDQAGGGGGD LTDIVRSGGA IPGNAAEMSS TAAADEWQLQ GDPMLFPPLP  60
SSTTSEAAAC SAGGGTGADV FGADPFSGLV DPFSTDYSSG ADFLDAMPDA MAKVGFDTAI  120
CGGSGSGCGG GGAGGGGQLI DMSRKQPLLP RGVQMPALGV LAPRMVLPSP LSSPREIRPY  180
PPLAGDMVKL GITAGQVAGC AIDAAVVGMQ MSSPRSAGGI KRRKNQARKV VCIPAPTAAG  240
GRPTGEVVPS DLWAWRKYGQ KPIKGSPYPR GYYRCSSSKG CSARKQVERS RTDPNMLVIT  300
YTSEHNHPWP TQRNALAGST RNHHGKNSGG SSGSKSSQNE KQQQQQQPNN VKEEPKDPAA  360
TTTTTSTITT TTTSTSPAAV VKEETLAAGS SSEALGQQVM DTTALAVVDH NIELMDQVFG  420
ESYKPMIPEA GHSDDFFSDL AELESDPMSL IFSKEYMEAK PSSGGDRGHH QEKAMSKDLD  480
PLFDMLDWST NSSSAGSPFE QGKRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B5e-25224311280Disease resistance protein RRS1
5w3x_D5e-25224311280Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G201000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021318261.10.0uncharacterized protein LOC8071106
TrEMBLA0A1B6PN050.0A0A1B6PN05_SORBI; Uncharacterized protein
STRINGSb06g027290.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25923888
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.12e-63WRKY DNA-binding protein 35