PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G197500.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 347aa    MW: 36977.5 Da    PI: 6.9541
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G197500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.82.1e-0981130355
                           HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           ++h + Er+RR+++ +a++ Lr+ lP +   +    +Ka+++  A++++k+L+
  Sobic.006G197500.1.p  81 MNHMAFERNRRRQMSEALAALRSFLPDS---YVHQSDKAAVVSGAINCVKELE 130
                           689999*********************9...9999***************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.63E-876134No hitNo description
SuperFamilySSF474596.02E-1477154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.03378129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-681130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-1082149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-684135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5167110.057252329IPR002912ACT domain
CDDcd048730.0044255319No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MTLEAQCTTT SDVLVYDTAA AAACAGSAGA ESSLFGNAAP AEAPAASQAN GESSVQQVRG  60
NRRGRQRTTK NDSDAENQRL MNHMAFERNR RRQMSEALAA LRSFLPDSYV HQSDKAAVVS  120
GAINCVKELE LHLQALEAQK LALNRQQLLL QQQQRRSDTA AERNAAKLSP GHDNPASAGN  180
NSGDAAARGE VPAPAPQPPP FAWFFRYPQY AWRQAKQARK YAAAVVEGEE ASRRAAAVAD  240
VEVGMVDHGH ASLRVMAPRR PGQLLRMVAV MQELGLHVLH LTVATAPDAT VLYTFNLLAE  300
EGCSLATEEE IAAAVHHVLC IIDAEVTAHR LLAAGAAGHP GLERSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G197500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021319782.10.0transcription factor bHLH96
TrEMBLA0A1B6PMX50.0A0A1B6PMX5_SORBI; Uncharacterized protein
STRINGSb06g026970.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37123678
Representative plantOGRP25315131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-17bHLH family protein