PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.006G192100.1.p | ||||||||
Common Name | Sb06g026500, SORBIDRAFT_06g026500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | MYB_related | ||||||||
Protein Properties | Length: 444aa MW: 48418.2 Da PI: 7.9453 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.3 | 1.3e-16 | 57 | 101 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E++l+++a +q+G W++I +++g +t+ q++s+ qk+ Sobic.006G192100.1.p 57 REKWTEDEHKLFLEALQQHGRA-WRRIQEHIG-SKTAVQIRSHAQKF 101 789*****************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.21E-15 | 51 | 104 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.136 | 52 | 106 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-9 | 54 | 107 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.6E-15 | 55 | 104 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 3.5E-13 | 56 | 104 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.2E-14 | 57 | 100 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.32E-10 | 59 | 102 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 444 aa Download sequence Send to blast |
MARFQARNDQ SPAADHVGHG NFMDHHLKNT LNCGELDLPG GARAPKARKP YTISKQREKW 60 TEDEHKLFLE ALQQHGRAWR RIQEHIGSKT AVQIRSHAQK FFSKVIRESS GDSNSIAAPP 120 QIQIPPPRPK RRPTHPYPRK LGNSVGKGAS AIKQLQKPLL QTQSLSEQEN CSPKSVLSTA 180 QIDSDTLQTE GSGSPASSVY MEDKCLTPST SVALSKDATT SNDVACEIPE GPVLRLFGKR 240 VVVNNLDQQP SSNTGSLQHV ADMELDASAE TPTGGTGELP SHVAEEAKTW CPWLTGTQQI 300 MYYLPQGEVF SMHSACQFLN YGNGSISYVV LNQQTVASNK QQNQPSQVPH SKVTRAEGSW 360 TESITTSSSV AETTQNSDSI ESTKVNNDED KVVPVPGSRK CASTVPACLR GFVPYKKCTA 420 QSKMLQPEAT GEEADREMTR LCL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.6742 | 0.0 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.006G192100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU976661 | 0.0 | EU976661.1 Zea mays clone 986506 hypothetical protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002448396.1 | 0.0 | uncharacterized protein LOC8060442 | ||||
TrEMBL | C5YEK4 | 0.0 | C5YEK4_SORBI; Uncharacterized protein | ||||
STRING | Sb06g026500.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2722 | 36 | 86 | Representative plant | OGRP1255 | 15 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17300.1 | 2e-33 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.006G192100.1.p |
Entrez Gene | 8060442 |