PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.006G184700.1.p | ||||||||
Common Name | Sb06g025890, SORBIDRAFT_06g025890 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | ERF | ||||||||
Protein Properties | Length: 217aa MW: 22810.1 Da PI: 7.0929 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.9 | 9.2e-17 | 17 | 66 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+G+r +++g+Wv+eIr+p++ ++r++lg+f tae+Aa a++ a+++l+g+ Sobic.006G184700.1.p 17 FYRGIR--SRSGKWVSEIREPRK---TRRIWLGTFPTAEMAAVAYDVAARALRGA 66 69***6..678*********843...5*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 5.7E-29 | 17 | 79 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-18 | 17 | 74 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 20.35 | 17 | 73 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.9E-28 | 18 | 74 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.7E-9 | 18 | 65 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.74E-25 | 18 | 75 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MSDRGGPASP RSGKHPFYRG IRSRSGKWVS EIREPRKTRR IWLGTFPTAE MAAVAYDVAA 60 RALRGADAAL NFPHLAASRP APASTSADDI RAAAAEAAAS LLLQQEQQQQ PADHHQPPAR 120 GGAPGRGIAP AEAGAAQQQT GGSSAAAWAQ QEGGSGAGNP YFLDEEALFE TPQYLRNMAA 180 GMMMSPPRFG RNSSDDSPDH PSSSDAGDSL WSYRDP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 7e-14 | 14 | 74 | 11 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00558 | DAP | Transfer from AT5G52020 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.006G184700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU955751 | 1e-148 | EU955751.1 Zea mays clone 1544743 ap2/EREBP transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021318413.1 | 1e-153 | ethylene-responsive transcription factor ERF027 | ||||
TrEMBL | C5YE47 | 1e-152 | C5YE47_SORBI; Uncharacterized protein | ||||
STRING | Sb06g025890.1 | 1e-152 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3654 | 27 | 62 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52020.1 | 4e-15 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.006G184700.1.p |
Entrez Gene | 8060408 |