PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G182300.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family Dof
Protein Properties Length: 359aa    MW: 35938.6 Da    PI: 7.5524
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G182300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.51.7e-3959120263
                zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 
                           kekal+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss
  Sobic.006G182300.2.p  59 KEKALNCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 120
                           57899*****************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074786.0E-2959117IPR003851Zinc finger, Dof-type
PfamPF027012.3E-3361117IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.05963117IPR003851Zinc finger, Dof-type
PROSITE patternPS01361065101IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MDAAHWQQGL GLVKPMEEML MAANAGAANP SQGSNNPNPP APAPGGALRG GGAPAAPLKE  60
KALNCPRCNS TNTKFCYYNN YSLQQPRYFC KTCRRYWTEG GSLRNVPVGG GSRKNKRSSS  120
SASASASTSA SVTSSSMASA EGAAASKNPK LAHEGAHDLN LAFPHHGGLH APEFAAFPSL  180
ESSNVCNPGG GMTSNGRGGG AGPAVGALSA MELLRSSGCY MPLQMPMQMQ GDYTAAEFAL  240
GDFRTPPPPP SQSVLGFSLD AHGPGSGAAA AGYGSSAGLQ GVTENAGRLL FPFEDLKPPV  300
SSGGGGVAGG ATGGAGDGNS NHNQFDHNKE QDGGGGPGAG HDTPGFWSGM IGGSGASW*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.202873e-75callus
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed at low level in germinating seeds 3 to 5 days after imbibition. {ECO:0000269|PubMed:11470159}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250|UniProtKB:Q6K537}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G182300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC5824130.0KC582413.1 Sorghum bicolor dof20 protein (dof20) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021319588.11e-173dof zinc finger protein DOF4.6 isoform X2
SwissprotQ9SXG81e-123DOF1_ORYSJ; Dof zinc finger protein 1
TrEMBLA0A1Z5RF940.0A0A1Z5RF94_SORBI; Uncharacterized protein
STRINGSb06g025680.11e-161(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24060.12e-39Dof family protein
Publications ? help Back to Top
  1. Washio K
    Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains.
    Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62
    [PMID:11470159]