PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.006G182300.1.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

Dof

Protein Properties

Length: 389aa MW: 38945.9 Da PI: 8.5665

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.006G182300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125	2.5e-39	89	150	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 kekal+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss Sobic.006G182300.1.p 89 KEKALNCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 150 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-31	85	147	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.6E-33	91	147	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.059	93	147	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	95	131	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence Send to blast
MVMCSRSSSS SSTETHNPTR AQAAKGLGLV KPMEEMLMAA NAGAANPSQG SNNPNPPAPA 60 PGGALRGGGA PAAPLAGAGS TERRARPQKE KALNCPRCNS TNTKFCYYNN YSLQQPRYFC 120 KTCRRYWTEG GSLRNVPVGG GSRKNKRSSS SASASASTSA SVTSSSMASA EGAAASKNPK 180 LAHEGAHDLN LAFPHHGGLH APEFAAFPSL ESSNVCNPGG GMTSNGRGGG AGPAVGALSA 240 MELLRSSGCY MPLQMPMQMQ GDYTAAEFAL GDFRTPPPPP SQSVLGFSLD AHGPGSGAAA 300 AGYGSSAGLQ GVTENAGRLL FPFEDLKPPV SSGGGGVAGG ATGGAGDGNS NHNQFDHNKE 360 QDGGGGPGAG HDTPGFWSGM IGGSGASW*

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence Send to blast

MVMCSRSSSS SSTETHNPTR AQAAKGLGLV KPMEEMLMAA NAGAANPSQG SNNPNPPAPA  60
PGGALRGGGA PAAPLAGAGS TERRARPQKE KALNCPRCNS TNTKFCYYNN YSLQQPRYFC  120
KTCRRYWTEG GSLRNVPVGG GSRKNKRSSS SASASASTSA SVTSSSMASA EGAAASKNPK  180
LAHEGAHDLN LAFPHHGGLH APEFAAFPSL ESSNVCNPGG GMTSNGRGGG AGPAVGALSA  240
MELLRSSGCY MPLQMPMQMQ GDYTAAEFAL GDFRTPPPPP SQSVLGFSLD AHGPGSGAAA  300
AGYGSSAGLQ GVTENAGRLL FPFEDLKPPV SSGGGGVAGG ATGGAGDGNS NHNQFDHNKE  360
QDGGGGPGAG HDTPGFWSGM IGGSGASW*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sbi.20287	3e-84	callus

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed at low level in germinating seeds 3 to 5 days after imbibition. {ECO:0000269\|PubMed:11470159}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250\|UniProtKB:Q6K537}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.006G182300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC582413	0.0	KC582413.1 Sorghum bicolor dof20 protein (dof20) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002448355.2	0.0	dof zinc finger protein DOF4.6 isoform X1
Swissprot	Q9SXG8	1e-124	DOF1_ORYSJ; Dof zinc finger protein 1
TrEMBL	A0A1B6PMP3	0.0	A0A1B6PMP3_SORBI; Uncharacterized protein
STRING	Sb06g025680.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2369	34	86
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	1e-43	Dof family protein

Link Out ? help Back to Top
Phytozome	Sobic.006G182300.1.p

Publications ? help Back to Top
Washio K Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains. Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62 [PMID:11470159]