PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G180900.3.p
Common NameSb06g025550, SORBIDRAFT_06g025550
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 575aa    MW: 59689.5 Da    PI: 8.6779
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G180900.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-056385123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          ++C+ C+k F r  nL+ H r H
  Sobic.006G180900.3.p 63 FVCEVCNKGFQREQNLQLHRRGH 85
                          89*******************88 PP
2zf-C2H211.60.00084140162123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           +kC +C+k++  +s+ k H + +
  Sobic.006G180900.3.p 140 WKCDKCSKRYAVQSDWKAHSKIC 162
                           58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.91E-76285No hitNo description
Gene3DG3DSA:3.30.160.607.9E-66285IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.0946385IPR007087Zinc finger, C2H2
SMARTSM003550.00416385IPR015880Zinc finger, C2H2-like
PfamPF121713.7E-56385IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002806585IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.9E-4128161IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.91E-7135160No hitNo description
SMARTSM00355140140160IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MASNSSAAAF FGVRDGDQQD QIKPLISPQQ QLAPPPKKKR TMPDPDAEVI ALSPKTLLAT  60
NRFVCEVCNK GFQREQNLQL HRRGHNLPWK LKQKNPLQAQ RRRVYLCPEP TCVHHDPARA  120
LGDLTGIKKH FCRKHGEKKW KCDKCSKRYA VQSDWKAHSK ICGTREYRCD CGTLFSRRDS  180
FITHRAFCDA LAQESARLPP TSLSSLTSHL YGATNAGNMA LSLSQVGSHL TSTLQDGHHH  240
HPSPELLRLG AAAGGGGSSI AARLDHLLSP NGASAFRSPQ APPSSASFFL NAGASVGQDF  300
GDDAGNGPHS YLQANKPFHG LMQLPDLQGN GAGGPGASGP SLFNLGFFAN NGNSSGSSHE  360
HASQGLMNND QFSGGAGGGG GGGGSEVSAA GIFGGNFVGG GDQVPPPGLY SDQASMLPQM  420
SATALLQKAA QMGATSSTNG GAASMFRGFV GSSSPHVRPA TPHMEQSDAN LNDLMNSLAG  480
GGVGGGGMFG GGNGAVSAGM FDPRQLCNMA EHEVKFGQGG GDMTRDFLGV GGGGIVRGIS  540
TPRGGGGDHQ SSSDMSSLEA EMKSASSFNG GRMP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-34136205370Zinc finger protein JACKDAW
5b3h_F1e-34136205370Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1372384SGGAGGGGGGGGS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.171580.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G180900.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7548660.0AY754866.1 Zea mays INDETERMINATE-related protein 9 mRNA, complete cds.
GenBankBT0641200.0BT064120.1 Zea mays full-length cDNA clone ZM_BFc0139A11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002446943.10.0protein indeterminate-domain 5, chloroplastic
RefseqXP_021318855.10.0protein indeterminate-domain 5, chloroplastic
TrEMBLA0A1Z5REM20.0A0A1Z5REM2_SORBI; Uncharacterized protein
STRINGSb06g025550.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-102indeterminate(ID)-domain 2