PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G175700.25.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 468aa    MW: 51409.7 Da    PI: 4.4132
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G175700.25.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.21e-06396424435
                            HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TT CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPk.askaps 35 
                            +h +  r+RR+++N+ f  L++l+P+      +
  Sobic.006G175700.25.p 396 NHIMSQRKRREKLNEMFLILKSLVPSvH----K 424
                            799999*******************944....2 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.6E-5022206IPR025610Transcription factor MYC/MYB N-terminal
Gene3DG3DSA:4.10.280.109.8E-6395425IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.76E-7395426IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.85E-7395434No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MAPSASPVQE GLQQAAERQL MRNQLAAAAR SINWTYAFFW SISSTQPGVL TWTDGFYNGE  60
VKTRKISSSV ELTADQLVMQ RSEQLRELYE ALLSGECDRR PAPVRPVSSL SPEDLGDTEW  120
YYVVCMTYTF RPGQGLPGRS FASNEYVWLC NAHLAASKAF PRALLAKSAS IQSIVCIPLM  180
GGVLELGTTD TVPEDPDLIS RATAAFWEPQ CPTYSEYPST NPSANETGEA ADDDVVVFED  240
LDPNAMDMET MTAFGGHGQE LGEAESLFNA NLKYITKEFD EFYSLCEEMD MQQLEDDWTM  300
VNGSNFEDPS SLQPAPPGAT TANVADTSST RADSSRATSF MAWTRSSQSY SDEVAAVSVI  360
EEPQKLLKKV VAGSGAWANY GGRDTIGTFQ QSGIKNHIMS QRKRREKLNE MFLILKSLVP  420
SVHKKNLDLK NSILCNTPLG TSKKDIMNND CQSLFPNFLV CIGIPSV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A3e-213320623192Transcription factor MYC3
4rqw_B3e-213320623192Transcription factor MYC3
4rs9_A3e-213320623192Transcription factor MYC3
4yz6_A3e-213320623192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1401406RKRREK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G175700.25.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021318741.10.0anthocyanin regulatory R-S protein isoform X2
SwissprotP130270.0ARRS_MAIZE; Anthocyanin regulatory R-S protein
TrEMBLA0A1B6PMG80.0A0A1B6PMG8_SORBI; Uncharacterized protein
STRINGSb06g025060.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63650.32e-64bHLH family protein
Publications ? help Back to Top
  1. Pattanaik S,Xie CH,Yuan L
    The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength.
    Planta, 2008. 227(3): p. 707-15
    [PMID:18075757]
  2. Huang ZA, et al.
    The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.).
    J Genet Genomics, 2012. 39(3): p. 149-56
    [PMID:22464474]
  3. Perrot GH,Cone KC
    Nucleotide sequence of the maize R-S gene.
    Nucleic Acids Res., 1989. 17(19): p. 8003
    [PMID:2798145]
  4. Li P, et al.
    Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize.
    PLoS ONE, 2018. 13(1): p. e0190670
    [PMID:29304111]