PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G175200.1.p
Common NameSb06g025020, SB20O07.10, SORBIDRAFT_06g025020
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 441aa    MW: 47420.6 Da    PI: 4.7202
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G175200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.31.6e-14244291355
                           HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                           ++h + Er+RR++iN+ f  L++l+P+        K++Ka+iL++++ Y+k+Lq
  Sobic.006G175200.1.p 244 KNHVMSERKRREKINEMFLILKSLVPSiH------KVDKASILTETIAYLKELQ 291
                           5899***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.3E-91859IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.234241290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.37E-19244305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.53E-18244295No hitNo description
PfamPF000106.5E-12245291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-17245302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-17247296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MNYVRGTCMC GLGCLRTVKQ SASIQSIICI PLMGGVLELG TTDTVPEDPD LISRATAAFW  60
EPQCPTYSEE PTSNPSANEA GEAADIVVFE DQLGHSAMKT TTAAGNEPVS LFNASLDHIT  120
DEIDDFYSLL EEMVVRPLPL EDSLIMVDGS NNFEVPSSPE PPSPGATTNN NGADTSSSPA  180
DGSRATSFMA WTRSSQSCSD EAVAAVPVIE EPQKLLKKVV AGGEAWANCG GGGTAGTAQE  240
SGIKNHVMSE RKRREKINEM FLILKSLVPS IHKVDKASIL TETIAYLKEL QRRVQELESS  300
RELTTPSETT TRTTRPRGIS NESARKKLCA GSKRESPALE VDGDVVNKEH PWVLPKDGTS  360
NVTVTVANTD VLLEVQCRWE ELLMTRVFDA IKSLHLDVLS VQASTPDGFM GLKIRAQFAG  420
SGAVVPWMIS EALHKAIGKR *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1249254ERKRRE
2250255RKRREK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G175200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5423110.0AY542311.1 Sorghum bicolor clone SB20O07 b1-1, b1-2, putative genetic modifier, hypothetical protein, putative NAM protein, putative cis-zeatin O-glucosyltransferases, putative small nuclear ribonucleoprotein, putative cis-zeatin O-glucosyltransferase, putative glutathione peroxidase, putative copper-exporting ATPases, putative serine/threonine dehydratase, and putative actin depolymerizing factor genes, complete cds; and hypothetical protein gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021318745.10.0anthocyanin regulatory R-S protein
SwissprotP130271e-177ARRS_MAIZE; Anthocyanin regulatory R-S protein
TrEMBLC5YDL10.0C5YDL1_SORBI; Uncharacterized protein
STRINGSb06g025020.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63650.37e-37bHLH family protein
Publications ? help Back to Top
  1. Swigonov
    Close split of sorghum and maize genome progenitors.
    Genome Res., 2004. 14(10A): p. 1916-23
    [PMID:15466289]
  2. Lai J, et al.
    Gene loss and movement in the maize genome.
    Genome Res., 2004. 14(10A): p. 1924-31
    [PMID:15466290]
  3. Swigonov
    Structure and evolution of the r/b chromosomal regions in rice, maize and sorghum.
    Genetics, 2005. 169(2): p. 891-906
    [PMID:15489523]
  4. Pattanaik S,Xie CH,Yuan L
    The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength.
    Planta, 2008. 227(3): p. 707-15
    [PMID:18075757]
  5. Huang ZA, et al.
    The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.).
    J Genet Genomics, 2012. 39(3): p. 149-56
    [PMID:22464474]
  6. Perrot GH,Cone KC
    Nucleotide sequence of the maize R-S gene.
    Nucleic Acids Res., 1989. 17(19): p. 8003
    [PMID:2798145]
  7. Li P, et al.
    Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize.
    PLoS ONE, 2018. 13(1): p. e0190670
    [PMID:29304111]