PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G172900.1.p
Common NameSb06g024820, SORBIDRAFT_06g024820
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family GRAS
Protein Properties Length: 721aa    MW: 74917 Da    PI: 5.6396
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G172900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS269.61e-823627193374
                  GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                           + L ++A+a + g+   a ++Larl+++  p g+p+ R a+y++eAL   l++      ++ +++ ts+ +++ +l a+k fs++sP+l
  Sobic.006G172900.1.p 362 DELAAAAKAAEVGNSIGALEILARLNQQLPPVGKPFLRSASYLKEALLLALSD-----GHQGSTRLTSPIDVVLKLGAYKSFSDLSPVL 445
                           7899*************************************************.....6777888888899****************** PP

                  GRAS  92 kfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgv 174
                           +f+++ta qa+l+++++   +++ iiDfd++ G+QW+++lq+La R+       p+l++T+++s++s++  el+ t+e+L++fA+ lg+
  Sobic.006G172900.1.p 446 QFANFTATQALLDEIASTtsSCIRIIDFDLGVGGQWASFLQELAHRRgtgnVTLPMLKLTAFVSSASHHPLELHLTRENLSQFAADLGI 534
                           *************998877799************************96544459*********************************** PP

                  GRAS 175 pfefnvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262
                           pfef+++   +l+++++ eL   + +E++aV+l +     +    +l    + +L+lvk+l Pk+ v +++ +d+++ +F ++f+++++
  Sobic.006G172900.1.p 535 PFEFTAI---NLDAFDPAELIPPTaDEVVAVCLPVGCSARM---PPL----PMLLQLVKQLAPKIAVAIDHGSDRGDLPFSQHFMNCFQ 613
                           ******9...9*******9965558********99877665...455....55************************************ PP

                  GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrv 351
                            ++ l+dsl+a  ++++++++k+Er+l++ +++++v  + ++     e+++ Wr+ +++aGF pvpls+ a++qa++ll++v+++g++v
  Sobic.006G172900.1.p 614 SCMFLLDSLDAA-GTNADAASKIERFLIQSRVEDAVLGRRKA-----EKAMAWRAVFTSAGFAPVPLSNLAEAQADCLLKRVQVRGFHV 696
                           *********999.8999*******************988887.....999*************************************** PP

                  GRAS 352 eeesgslvlgWkdrpLvsvSaWr 374
                           e+    l l+W++ +LvsvSaWr
  Sobic.006G172900.1.p 697 EKCGMGLALYWQRGELVSVSAWR 719
                           **********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.266334699IPR005202Transcription factor GRAS
PfamPF035143.5E-80362719IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 721 aa     Download sequence    Send to blast
MRAAPFSADG SGAGTIEALL WPDGKGGGGG GDLLVEPTSV LDCRRSPSPP YSTSTLSSSL  60
GGAAGDSSSG VAAVSDNSAA AAAEATKWAA PGEHGGGGGG GGGGGGRKEE WSGGELPPIP  120
GTLDVGFVGE EGWDAMLGDA TAVAGQDQTF LNWIMTAPGD MEPPAPPLLG NAAGFGFPTS  180
DPLGFSLQHH PGGGGGASAG ALASDLSSPG ARSLTSSSGS SSKATSTFGL LPTEAVLQPP  240
PPAATTMPFH DGGDIKPPLL GVPSANLLLN QHQTLPAASF FMPLPSFPDH QHQPHLPPPP  300
KRHHSMPDNL FLLQNQLQPP PQGLPFPPVH NTGPFQLQPS LQPPRGALKT TPAAQQHQQL  360
LDELAAAAKA AEVGNSIGAL EILARLNQQL PPVGKPFLRS ASYLKEALLL ALSDGHQGST  420
RLTSPIDVVL KLGAYKSFSD LSPVLQFANF TATQALLDEI ASTTSSCIRI IDFDLGVGGQ  480
WASFLQELAH RRGTGNVTLP MLKLTAFVSS ASHHPLELHL TRENLSQFAA DLGIPFEFTA  540
INLDAFDPAE LIPPTADEVV AVCLPVGCSA RMPPLPMLLQ LVKQLAPKIA VAIDHGSDRG  600
DLPFSQHFMN CFQSCMFLLD SLDAAGTNAD AASKIERFLI QSRVEDAVLG RRKAEKAMAW  660
RAVFTSAGFA PVPLSNLAEA QADCLLKRVQ VRGFHVEKCG MGLALYWQRG ELVSVSAWRC  720
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-233607194375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G172900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0634500.0BT063450.1 Zea mays full-length cDNA clone ZM_BFc0064F13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002446917.10.0scarecrow-like protein 6
TrEMBLC5YDJ70.0C5YDJ7_SORBI; Uncharacterized protein
STRINGSb06g024820.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20203796
Representative plantOGRP17501242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.19e-89GRAS family protein