PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G171600.1.p
Common NameSb06g024690, SORBIDRAFT_06g024690
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 334aa    MW: 34871.6 Da    PI: 6.503
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G171600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.8e-05526223
                          EETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                          +C+ C+++F ++  L  H+r H
  Sobic.006G171600.1.p  5 TCKLCSRRFASPRALAGHMRAH 26
                          6*******************99 PP
2zf-C2H212.40.00047253275123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++Cp+C ++F++   L  H r+H
  Sobic.006G171600.1.p 253 HECPYCFRVFPSGQALGGHKRSH 275
                           79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.66427IPR007087Zinc finger, C2H2
SMARTSM003550.02426IPR015880Zinc finger, C2H2-like
PfamPF138941.9E-4526No hitNo description
SuperFamilySSF576676.65E-7526No hitNo description
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576676.65E-7183207No hitNo description
PfamPF139121.4E-10187212IPR007087Zinc finger, C2H2
SMARTSM0035541188208IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.871253275IPR007087Zinc finger, C2H2
SMARTSM003550.13253275IPR015880Zinc finger, C2H2-like
PfamPF139121.1E-11253275IPR007087Zinc finger, C2H2
PROSITE patternPS000280255275IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MAKNTCKLCS RRFASPRALA GHMRAHSVAA AKSQISSASS ASTSIAAGGG IDDDAADAKK  60
KPSPIQGGHV LREKNPKRRV RLDDDSDFSD RESETTDYYS PASPDAKRSH AGSGDAEPVS  120
SVSDAATPEE DVALSLMMLS RDSWPAPPPS PYPYPFRLDS DDDDDDARRV VAAATAAAAA  180
AQQKRTRYEC PACKKVFRSY QALGGHRASN VRGGRGGCCA PPLSTPPPPG PAPLQPLPEC  240
EGSEEDSKAQ QPHECPYCFR VFPSGQALGG HKRSHLCSAA AAAAAAAVTS SADPSSITMK  300
SLDFIDLNLP APFDDVEVSA FSDPFLSSKP AGS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.139470.0pollen
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G171600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9698781e-158EU969878.1 Zea mays clone 336750 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002446910.10.0zinc finger protein ZAT1
TrEMBLC5YDI40.0C5YDI4_SORBI; Uncharacterized protein
STRINGSb06g024690.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35183377
Representative plantOGRP24041030
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.14e-27C2H2-like zinc finger protein