PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G170100.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 231aa    MW: 23935.5 Da    PI: 5.0884
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G170100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.1e-184392255
                   AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           y+GVr ++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  Sobic.006G170100.1.p 43 TYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFATAEMAARAHDVAALAIKG 92
                          69****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003806.7E-3643107IPR001471AP2/ERF domain
PfamPF008471.6E-124392IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-1943102IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.2E-3143102IPR001471AP2/ERF domain
PROSITE profilePS5103222.64243101IPR001471AP2/ERF domain
PRINTSPR003671.0E-104455IPR001471AP2/ERF domain
CDDcd000184.75E-2744101No hitNo description
PRINTSPR003671.0E-106682IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MDDAQEPASP TSPSPSSSSS SSSSSSSVGP KKRARKDGSR HPTYRGVRMR SWGKWVSEIR  60
EPRKKSRIWL GTFATAEMAA RAHDVAALAI KGARDAHLNF PSQAHLLPRP ASAAPKDVQA  120
AAALAAAADF PPLPSSCPCP GEGAGNAKSP ESSSSDDASA SAASPPPPPP PPPPAPQEDA  180
EPNPDDALFD LPDLLLDLRC CGPSSWAVAD DDVAGGGAFR LIEEPLLWEY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1634106577Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.75565e-85leaf
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G170100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9653060.0EU965306.1 Zea mays clone 285154 dehydration-responsive element-binding protein 1C mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002446900.21e-159ethylene-responsive transcription factor ERF039
SwissprotQ8LBQ72e-44ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A1Z5RES41e-158A0A1Z5RES4_SORBI; Uncharacterized protein
STRINGGRMZM2G172936_P011e-80(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.13e-36ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]