PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G170000.1.p
Common NameSb06g024540, SORBIDRAFT_06g024540
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 255aa    MW: 26905.9 Da    PI: 4.6119
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G170000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.6e-1866115255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            y+GVr +  +g+Wv+eIr+p++   + r++lg+f+ +e+Aa+a++aa+ +++g
  Sobic.006G170000.1.p  66 TYRGVRMRT-WGKWVSEIREPRK---KSRIWLGTFDNPEMAARAHDAAAVAIKG 115
                           69****998.**********843...6**********************98877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.63E-2166124IPR016177DNA-binding domain
PfamPF008471.8E-1166114IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.7E-3266124IPR001471AP2/ERF domain
PROSITE profilePS5103222.33966123IPR001471AP2/ERF domain
SMARTSM003806.3E-3566129IPR001471AP2/ERF domain
PRINTSPR003676.8E-106778IPR001471AP2/ERF domain
CDDcd000181.30E-2067125No hitNo description
PRINTSPR003676.8E-1089105IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MEHEQVVSPQ VSEGCCTCSS SSFSNTTTTS GGGGSLNASS PSSSDDSGGG GNKGTKRPRR  60
DLKHPTYRGV RMRTWGKWVS EIREPRKKSR IWLGTFDNPE MAARAHDAAA VAIKGRAAHL  120
NFPDLAHELP RAASAAPKDV QAAAALAAAT VVVAASPAVV PSSCGHDDAD AETEDLPPPE  180
RAMPECESVN QAQLEQLGGD IDSGLGFTFL DVPDALLDFG HMLSPLPLPS YCGSPWDDIA  240
DDLCFEEPLL LWEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-17631231172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G170000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278641e-179KJ727864.1 Zea mays clone pUT5956 AP2-EREBP transcription factor (EREB185) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021319705.10.0ethylene-responsive transcription factor ERF038
TrEMBLA0A1Z5REB50.0A0A1Z5REB5_SORBI; Uncharacterized protein
STRINGSb06g024540.11e-125(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.11e-28ERF family protein