PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G169900.1.p
Common NameSb06g024530, SORBIDRAFT_06g024530
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 319aa    MW: 33061 Da    PI: 4.6394
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G169900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.1e-19119169155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           + y+GVr+++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  Sobic.006G169900.1.p 119 PSYRGVRRRS-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAALAIKG 169
                           57*****887.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.79E-31119178No hitNo description
PfamPF008471.9E-13119169IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-32120178IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-22120178IPR016177DNA-binding domain
PROSITE profilePS5103224.118120177IPR001471AP2/ERF domain
SMARTSM003805.0E-37120183IPR001471AP2/ERF domain
PRINTSPR003677.9E-11121132IPR001471AP2/ERF domain
PRINTSPR003677.9E-11143159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MDAPAQRAMA VDTGNAPTTS CSSSSSTSSS SVVNDAPQEV VPKNSCKGTN KRKRASSPDS  60
QEQEVEANGS TNNGHHQGEE SSSCCCSTDD TEASVGDDKA EEAAAATATR SSRSGYKHPS  120
YRGVRRRSWG KWVSEIREPR KKSRIWLGTF PTAEMAARAH DVAALAIKGR AAHLNFPDRA  180
HELPRPASTS PADIQAAAAQ AAAGAADVQC DAPPSPSPSP SPSSSAELLL PSSPAADADA  240
SPEQAAAATM TTTHGDGGGG QGQGQGQESA LFDLPDLLLD LRDGLWWPPV WPAAAMAAEE  300
YDGCDVVGMH DEPLLWAE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-18115177972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.75567e-54leaf
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G169900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9563381e-157EU956338.1 Zea mays clone 1560970 dehydration-responsive element-binding protein 1B mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021318360.11e-157ethylene-responsive transcription factor ERF034
SwissprotQ8LBQ71e-48ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A1Z5RFC50.0A0A1Z5RFC5_SORBI; Uncharacterized protein
STRINGSb06g024530.11e-155(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.11e-40ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]