PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sobic.006G168200.1.p | ||||||||
Common Name | Sb06g024390, SORBIDRAFT_06g024390 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 286aa MW: 30704.5 Da PI: 6.5632 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.5 | 4.6e-20 | 75 | 124 | 2 | 54 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 +y+GVr+++ +g+++AeIrdp+ +g r++lg+++t+ eAa+a+++a+ +++ Sobic.006G168200.1.p 75 KYRGVRQRP-WGKYAAEIRDPKRRG--SRVWLGTYDTPIEAARAYDRAAFRMH 124 8********.**********96554..************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.1E-28 | 74 | 131 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.9E-14 | 75 | 124 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.10E-25 | 75 | 132 | No hit | No description |
SMART | SM00380 | 1.9E-31 | 75 | 136 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.639 | 75 | 130 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-19 | 75 | 131 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 5.2E-10 | 76 | 87 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.2E-10 | 99 | 115 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 286 aa Download sequence Send to blast |
MPFLPPPWTQ QQGYIGMDPS PTNEYMGEAA AAPPPVRQPL TVPLRPYASA AATAASAVEQ 60 LAAAATPEAV EDLRKYRGVR QRPWGKYAAE IRDPKRRGSR VWLGTYDTPI EAARAYDRAA 120 FRMHAILNFP NDVGTRGADF WAPPPPAPAK SKNAATAPAT ATNKRKRQQL LVVEDPDDDD 180 VEVIAVVKKE VKIVVEVPAY SSSSQVQVYS ASRSSSMSTR ETTATASSTV TSSPAEETGS 240 GAVEFPMTPS SGNWEQYWEA LLGTLPLLSP QSPHPALGFP QLTVT* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-22 | 75 | 132 | 14 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sobic.006G168200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021319691.1 | 2e-98 | ethylene-responsive transcription factor ERF104 | ||||
TrEMBL | C5YDF0 | 0.0 | C5YDF0_SORBI; Uncharacterized protein | ||||
STRING | Sb06g024390.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G47230.1 | 2e-28 | ethylene responsive element binding factor 5 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sobic.006G168200.1.p |
Entrez Gene | 8083351 |