PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G168100.1.p
Common NameSb06g024380, SORBIDRAFT_06g024380
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 354aa    MW: 37648.1 Da    PI: 4.6722
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G168100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.62.1e-20138189256
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                           +y+GVr+++ +g+++AeIrdp+ +g   r++lg+++t+ eAa+a+++a+ +++g+
  Sobic.006G168100.1.p 138 KYRGVRQRP-WGKYAAEIRDPKRRG--SRVWLGTYDTPIEAARAYDRAAFRMRGA 189
                           8********.**********96554..**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.3E-32137197IPR001471AP2/ERF domain
SMARTSM003802.0E-36138202IPR001471AP2/ERF domain
PfamPF008479.2E-15138188IPR001471AP2/ERF domain
PROSITE profilePS5103224.092138196IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-22138197IPR016177DNA-binding domain
CDDcd000182.29E-30138198No hitNo description
PRINTSPR003672.3E-13139150IPR001471AP2/ERF domain
PRINTSPR003672.3E-13178198IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MAFTGDADGF ALDFIREHLL GGGGGPVDST VDPDDLTFPV PPPQPEFEPT MPFLPPPLPP  60
QQHGYIDMDP TNEYMGEAAV AFPDPEPPAP PVVIAFGSQP SSPVRQPLTI AVPPRPYASA  120
AATAPPAAAA EAVEDFRKYR GVRQRPWGKY AAEIRDPKRR GSRVWLGTYD TPIEAARAYD  180
RAAFRMRGAK AILNFPNDVG TRGADFWAPP PPAPAKSKNA ATATTATNKR KRQQLLVVED  240
PDDDDVEVIA VVKKEAYDHG QVVPAYSSST SQGQVYSSAS QSSSMSTRET TATASSTVTS  300
SPTEETGPGA VGIPMTPSSG NWEQYWEALL GTLPLLSPQS PHPALGFPQL TVT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-25137201468ATERF1
3gcc_A1e-25137201468ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G168100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7275251e-154KJ727525.1 Zea mays clone pUT5385 AP2-EREBP transcription factor (EREB61) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021319691.10.0ethylene-responsive transcription factor ERF104
TrEMBLA0A1B6PMD60.0A0A1B6PMD6_SORBI; Uncharacterized protein
STRINGSb06g024380.11e-173(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.19e-32ethylene responsive element binding factor 5