PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.006G168000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | ERF | ||||||||
Protein Properties | Length: 335aa MW: 35591 Da PI: 4.6564 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.6 | 4.1e-20 | 150 | 201 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+++AeIrdp+ +g r++lg+++t+ eAa+a+++a+ +++g+ Sobic.006G168000.1.p 150 KYRGVRQRP-WGKYAAEIRDPKRRG--SRVWLGTYDTPVEAARAYDRAAFRMRGA 201 8********.**********96554..**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.7E-32 | 149 | 209 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.3E-14 | 150 | 200 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.105 | 150 | 208 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.9E-37 | 150 | 214 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-23 | 150 | 209 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.62E-30 | 150 | 209 | No hit | No description |
PRINTS | PR00367 | 1.7E-13 | 151 | 162 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-13 | 190 | 210 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MNMDFTGDAD GFALDFIRDL MLGGDGSVPV DSPVVVVSDD VTFPVLPPQP EFQPVSLLPQ 60 QQQHQGYIDI DLTTAECVGA APTAAAVVGE AAAFRAHEPA PPVMIKFGSE PSSPTAMRQP 120 PLTISVPPSS YAWVSSAGMP AAAVEEDFRK YRGVRQRPWG KYAAEIRDPK RRGSRVWLGT 180 YDTPVEAARA YDRAAFRMRG AKAILNFPNE VGTRGADLWA APATASKRRR QQMEGGQDDP 240 EVEVVAVVNK VVKIEAPPPP STQVSSTSPS PVSTPETTAS STVTSATTET GGGAEWLPVT 300 PSSGSSEQYW EALLRDLPPL SPHPALGFPL LSVN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-26 | 150 | 211 | 14 | 75 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00549 | DAP | Transfer from AT5G47230 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.006G168000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021319358.1 | 0.0 | ethylene-responsive transcription factor ERF105 | ||||
TrEMBL | A0A1B6PMF0 | 0.0 | A0A1B6PMF0_SORBI; Uncharacterized protein | ||||
STRING | GRMZM5G805505_P01 | 1e-147 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47230.1 | 7e-38 | ethylene responsive element binding factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.006G168000.1.p |