PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G166300.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 270aa    MW: 29102 Da    PI: 8.3794
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G166300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY322.4e-10172194123
                           ---SS-EEEEEEE--TT-SS-EE CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprs 23 
                           ldDgy+WrKYGqK+vk+s +p s
  Sobic.006G166300.1.p 172 LDDGYKWRKYGQKVVKNSLHPSS 194
                           59****************99976 PP
2WRKY56.26.7e-182082472059
                           S-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY  20 fprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           ++rsYYrCt+++C+vkk+ver +ed ++v++tYeg+H+h+
  Sobic.006G166300.1.p 208 TSRSYYRCTHSNCRVKKRVERLSEDCRMVITTYEGRHTHS 247
                           68*************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.1E-32157247IPR003657WRKY domain
SuperFamilySSF1182907.85E-23164247IPR003657WRKY domain
PROSITE profilePS5081122.745167246IPR003657WRKY domain
SMARTSM007741.3E-32172248IPR003657WRKY domain
PfamPF031064.4E-18173246IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MHACMEGSSQ LLETCLPASS LYALSPHHPL LAPLPNQHKL LQMPLVQEQA AANNHGVMLY  60
SDHHHHGGGL LYPLLLPGIP FCPFSAAADA ATCDKTTTTG GFAALDAGEA GTSVAKAAGE  120
IASTTTTCNG PSSCNWWKGP AAAGEKGGRM KVRRKMREPR FCFQTRSDVD VLDDGYKWRK  180
YGQKVVKNSL HPSSLVSAFS KLSLCMRTSR SYYRCTHSNC RVKKRVERLS EDCRMVITTY  240
EGRHTHSPCS DDADAAAGDH TGSCAFTSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-20163246874Probable WRKY transcription factor 4
2lex_A1e-20163246874Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147155GRMKVRRKM
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G166300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0679821e-138BT067982.1 Zea mays full-length cDNA clone ZM_BFb0009G22 mRNA, complete cds.
GenBankEU9728051e-138EU972805.1 Zea mays clone 388369 WRKY36 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds.
GenBankKJ7283121e-138KJ728312.1 Zea mays clone pUT6592 WRKY transcription factor (WRKY101) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021318414.10.0WRKY transcription factor WRKY62 isoform X1
TrEMBLA0A1B6PMC20.0A0A1B6PMC2_SORBI; Uncharacterized protein
STRINGSb06g024220.11e-163(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113838130
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44745.11e-47WRKY family protein