PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G166100.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family GATA
Protein Properties Length: 543aa    MW: 59298.8 Da    PI: 6.7824
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G166100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.82.2e-16741135
                  GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                          C++Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  Sobic.006G166100.1.p  7 CRHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGS 41
                          ****************55555***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.5E-10153IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.71E-11545No hitNo description
CDDcd002022.19E-15640No hitNo description
PROSITE profilePS5011411.345740IPR000679Zinc finger, GATA-type
PfamPF003203.3E-14741IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.0E-12741IPR013088Zinc finger, NHR/GATA-type
PfamPF139193.9E-11274362IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MGKQGPCRHC GVTSTPLWRN GPPDKPVLCN ACGSRWRTKG SLANYTPMHR KDDIDDDEPR  60
VSKLKPPTSK SKSQKKKPNH IIAENGLFSG QNFRKMGGVD PSYQSSSGSA VSYSESCAPY  120
GAADASEMTG SAQSHAWESL VPSRKRSCVT RPKPSPVEKL AKDLNSIMHG EQLYNLSGSS  180
EEDLLYHSET PVGSFEIGSG SVLLRHPNSK LLEEESEASS IPADNKSYIT SESYSGSVSF  240
VVHSGNKSAI NLNAPTARPK KSPLHMENNA RRDELHYENQ NVLESVDSPL VSVDLEDVIN  300
YTNFMKYLTK EDQQQLLKFL PPVDFLTPPE SLRSMFSSIQ FSDAIDSYQM LLGEGILDPS  360
LSGDEEWKKV KTLALTNLTK CKWLECYKQK KEKGAKETGG VGTISGPEGF TKSTMKPLKR  420
PRDTHFQSDA ELDGTMRSPL RVLKSGALAP QFESSSLPKS GYATKDSTCT GGALNLFMLP  480
PEKLSLLVPP EYADSDQDLL LEIPLNARHP EAELLCQPSQ LMSSITRSST SGAEGEGCLK  540
LP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.188740.0callus| panicle
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G166100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0424870.0BT042487.1 Zea mays full-length cDNA clone ZM_BFb0296I21 mRNA, complete cds.
GenBankEU9621170.0EU962117.1 Zea mays clone 240325 GATA transcription factor 29 mRNA, complete cds.
GenBankKJ7268460.0KJ726846.1 Zea mays clone pUT3386 C2C2-GATA transcription factor (GATA5) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021319847.10.0GATA transcription factor 26
TrEMBLA0A1B6PMC80.0A0A1B6PMC8_SORBI; Uncharacterized protein
STRINGGRMZM2G421212_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44243464
Representative plantOGRP27491530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.32e-91GATA transcription factor 26