PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G162800.2.p
Common NameSb06g023940, SORBIDRAFT_06g023940
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family GATA
Protein Properties Length: 381aa    MW: 40286.4 Da    PI: 8.0435
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G162800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.32.5e-19300334135
                  GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                           Cs+Cg+ kTp+WR gp+g ktLCnaCG++y++ +l
  Sobic.006G162800.2.p 300 CSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRL 334
                           *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.19E-14291355No hitNo description
PROSITE profilePS5011412.044294330IPR000679Zinc finger, GATA-type
SMARTSM004014.7E-18294348IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.7E-15298332IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.90E-15299356No hitNo description
PfamPF003202.6E-17300334IPR000679Zinc finger, GATA-type
PROSITE patternPS003440300325IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MDVLKCGNSV PPEDDAAAAG ALVEKDGFSV EDLLDLEEFG EPDKDGAEHE DDAPALAAAV  60
EEQPKAESQP LSVVTYELPP PPPPPELVDL PSHDVEELEW VSRIMDDSLS ELPPQPQPPM  120
AAVVASLAGR PPLAQQRRPP LAHDGAYRAV APPSHGPLRT PTICALSTEA MIPVKAKRSK  180
RSRGPGWSRS GASFLSDSAS SSSTTTTSSC SSSGSFSPFL RLDSPPFGGF DLGLGEGLFS  240
HLLPLPLPRP PSKKSKHGAK GSKHKPKKRG RKPKHLPPHH PSAGGGAAAS QQPGPSDRRC  300
SHCGVQKTPQ WRAGPEGAKT LCNACGVRYK SGRLLPEYRP ACSPTFESSI HSNSHRKVLE  360
MRRKKEGDMV ANAAPAVASF *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.79890.0callus| ovary
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G162800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9693520.0EU969352.1 Zea mays clone 329022 GATA zinc finger family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002446866.10.0GATA transcription factor 5
TrEMBLA0A1B6PMB00.0A0A1B6PMB0_SORBI; Uncharacterized protein
TrEMBLC5YD070.0C5YD07_SORBI; Uncharacterized protein
STRINGSb06g023940.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.21e-40GATA transcription factor 5