PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G156100.1.p
Common NameSb06g023313, SORBIDRAFT_06g023313
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 463aa    MW: 49050 Da    PI: 8.0203
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G156100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.8e-18222272256
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                            y+GVr+++ +g+WvAeIr p++   r+r +lg+f++ae+Aa a+++ + kl+ge
  Sobic.006G156100.1.p 222 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDSAEDAAMAYDREAFKLRGE 272
                           59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.44E-31221280No hitNo description
Gene3DG3DSA:3.30.730.102.4E-31222280IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-23222281IPR016177DNA-binding domain
PROSITE profilePS5103222.787222279IPR001471AP2/ERF domain
SMARTSM003804.7E-37222285IPR001471AP2/ERF domain
PRINTSPR003673.2E-10223234IPR001471AP2/ERF domain
PfamPF008477.4E-12223272IPR001471AP2/ERF domain
PRINTSPR003673.2E-10245261IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MDASSESGGG GAGSGRGGRR WKGKGVTPIQ PRRQLAPVME DASAALLRPL KKIGRAPDRF  60
QRSAASSLST TTSLSAPPSP RASAAGATSH APVSPPSARH MFPFAYEPSA AVGSAPRLEL  120
PPWQQHSASE SSQPASPHQQ QQAHQAPLQR HQQQQQMISF GAPTQYQAQL LLPEGPQQQH  180
HLLRYWSEAL NLSPRGGQAA AVLPSLYQHL LRAPPPPPPQ KLYRGVRQRH WGKWVAEIRL  240
PRNRTRLWLG TFDSAEDAAM AYDREAFKLR GENARLNFPD RFFGKGHAGG SGRTSATAAA  300
APTAAAASGS TSSSSPPQTP DEENTHQTPP DAEGSSGKQP QPPVATSSQL EGSSGGETTL  360
PDSGQMIHSP EAPAGSEWGP ADEAWFNTWG PGSSFWDDYD IDSTRGLFLH HGRFAGDEAG  420
INTATTAAAT GTDMSCDHVP VTPASSSSPL HSQSPHSPTF MD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-19221281465ATERF1
3gcc_A2e-19221281465ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00458DAPTransfer from AT4G28140Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G156100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7275130.0KJ727513.1 Zea mays clone pUT5372 AP2-EREBP transcription factor (EREB154) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002448218.20.0dehydration-responsive element-binding protein 2B
TrEMBLA0A1B6PM040.0A0A1B6PM04_SORBI; Uncharacterized protein
STRINGSb06g023313.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36913268
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28140.11e-37ERF family protein