PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.006G154000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | TCP | ||||||||
Protein Properties | Length: 208aa MW: 21339.2 Da PI: 10.3162 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 107.7 | 1.8e-33 | 51 | 146 | 9 | 89 |
TCP 9 skihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.seceaesssssasnsssg........ 88 +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl qa+p+i ++tg+++++a +c+++ s s+++ + Sobic.006G154000.1.p 51 KDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLHQAEPSILAATGSGTTPAvFSCSSAPSTSAGAG---Asltllgkr 136 8********************************************************99999444533333333222...122344433 PP TCP 89 .........k 89 + Sobic.006G154000.1.p 137 preehepapA 146 3333333332 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 25.368 | 50 | 104 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 3.0E-30 | 51 | 147 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MASRDGAATF QVYRPMPAPS PAPPPMSLSA AAADAAAPAP KKAKSPGGAC KDRHSKVNGR 60 GRRVRMPIVC AARVFQLTRE LGLKSDGQTI EWLLHQAEPS ILAATGSGTT PAVFSCSSAP 120 STSAGAGASL TLLGKRPREE HEPAPAPAPF WVTPTLQARP VAASWGLSPA QEAAAQAYAS 180 VAAQGHHHLN LLSVLSGATR PSEEESR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.006G154000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727696 | 1e-148 | KJ727696.1 Zea mays clone pUT5635 TCP transcription factor (TCP14) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002446818.2 | 1e-146 | transcription factor TCP7 | ||||
Swissprot | Q9FMX2 | 1e-38 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | C5YCH7 | 1e-144 | C5YCH7_SORBI; Uncharacterized protein | ||||
STRING | Sb06g023130.1 | 1e-133 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1941 | 33 | 100 | Representative plant | OGRP922 | 14 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 1e-36 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.006G154000.1.p |