PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G149600.1.p
Common NameSb06g022810, SORBIDRAFT_06g022810
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ARF
Protein Properties Length: 723aa    MW: 78108.2 Da    PI: 8.1356
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G149600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.97.1e-22167268199
                           EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                           f k+ltpsd+++ g +++p+ +a ++        +++ +   ++ +d +g +W++++iyr++++r++lt+GW++Fv+ ++L+ gD+vvF
  Sobic.006G149600.1.p 167 FAKTLTPSDANNGGGFSVPRFCALSIfpeldysFSPPVQ--FVSARDVHGVEWTFRHIYRGTPRRHLLTTGWSNFVHNKKLQPGDSVVF 253
                           89*********************999**99998666666..59999******************************************* PP

                           EE-SSSEE..EEEEE-S CS
                    B3  83 kldgrsefelvvkvfrk 99 
                              ++++++ +++++r+
  Sobic.006G149600.1.p 254 V--REEDGKVHIGLRRA 268
                           *..5589999**99986 PP
2Auxin_resp106.72.7e-35302385183
            Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                           aa+ a+ +++Fevv++Pras++eFvv+++ v+++++ ++++G Rfkmafeted s++++ +Gt++gv+ +dp rWp+S+Wr+L+
  Sobic.006G149600.1.p 302 AARLAAAGQPFEVVHYPRASAPEFVVRAAAVKESMQAPWCPGLRFKMAFETEDLSRISWfMGTIAGVEPADPARWPQSPWRLLQ 385
                           678999****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.19E-28159270IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-33160270IPR015300DNA-binding pseudobarrel domain
CDDcd100174.66E-21166263No hitNo description
PfamPF023626.8E-20167268IPR003340B3 DNA binding domain
PROSITE profilePS5086312.337167269IPR003340B3 DNA binding domain
SMARTSM010192.8E-21167269IPR003340B3 DNA binding domain
PfamPF065079.6E-31302385IPR010525Auxin response factor
PROSITE profilePS5174514.014636716IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 723 aa     Download sequence    Send to blast
MSAAAACAPT RRLGTTMLTF AARLPESPEE TEARRGAAAE PRGRDVDVHP RLWQACAGSM  60
RAVPPVGAAV YYFPQGHAEH AGGAAVDLRV PPFVPCRVAA VRLMADPDTD DVYARIRLVP  120
LRAWEPVADV GDAALVKTDG SSRGGADGDG DGDAGGGQQQ QPRPLSFAKT LTPSDANNGG  180
GFSVPRFCAL SIFPELDYSF SPPVQFVSAR DVHGVEWTFR HIYRGTPRRH LLTTGWSNFV  240
HNKKLQPGDS VVFVREEDGK VHIGLRRAKR VFCRRGGGGS NAGVAVAGPS DGKVPAEDVV  300
EAARLAAAGQ PFEVVHYPRA SAPEFVVRAA AVKESMQAPW CPGLRFKMAF ETEDLSRISW  360
FMGTIAGVEP ADPARWPQSP WRLLQVTWDE PELLRNVNRV CPWRVELVSS MPKLPRFSPP  420
PRKKPRTPSY TETRSERQQL FDPAFPFPPT HPLPLAPPSL ALLPAPNHDG NRHDFVPSFP  480
VIPDSIAAAG IQGARHLQFA PFFSDLHLSD LQRSLLFSGI QPADHQAPPA PRIATGLKIG  540
SPAPRSPSSE AKNGDDVKPP VIMLFGREIL TEEQMKSNSS TRSGSSKPDC DDEKTSSTSD  600
RSGSDVSHGS PAKKNSPSLT LWWSGDSSLS AFALEPGQCK VFVESDTLGR NLDLSALSSF  660
EELCARLSSF FGINNADLRS HMVYRTIAGE VKHVGDEPFS VFVKSARRIT ILTDAGSNNT  720
GK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A5e-734840651388Auxin response factor 5
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1420426PRKKPRT
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G149600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021318221.10.0auxin response factor 8
SwissprotQ6K2230.0ARFH_ORYSJ; Auxin response factor 8
TrEMBLA0A1B6PM250.0A0A1B6PM25_SORBI; Auxin response factor
STRINGSb06g022810.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Representative plantOGRP5261578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.11e-129auxin response factor 16