PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.006G147400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | NAC | ||||||||
Protein Properties | Length: 291aa MW: 31914.6 Da PI: 6.5106 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 134.5 | 7.1e-42 | 10 | 124 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppGfrF P+deelv++yL kkv d++ ePw+Lp ++k + +ewyfFs rd+kyatg+r+nratk+gyWkatgkd Sobic.006G147400.1.p 10 LPPGFRFYPSDEELVCHYLYKKV--------------DLHAREPWELPDAAKLTASEWYFFSFRDRKYATGSRTNRATKTGYWKATGKD 84 79*****************9876..............566679*****87788899********************************* PP NAM 90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +ev s ++ +vg++ktLvfy+grap+g+k+ Wvmhe+rl Sobic.006G147400.1.p 85 REVRSPaTRGVVGMRKTLVFYQGRAPNGVKSCWVMHEFRL 124 ****9977788***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 42.678 | 1 | 143 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 5.89E-55 | 8 | 143 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.8E-27 | 11 | 124 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MGLREIESTL PPGFRFYPSD EELVCHYLYK KVDLHAREPW ELPDAAKLTA SEWYFFSFRD 60 RKYATGSRTN RATKTGYWKA TGKDREVRSP ATRGVVGMRK TLVFYQGRAP NGVKSCWVMH 120 EFRLDSPHTP PKEDWVLCRV FQKRKDSEQD NGGGSSSPTT FAGASQSQGV LPEPDQPTSM 180 MDASYVVDQP GSTAGIFAAP PHHHQENLMS LGIGGLDALL MNGAMWQYTS SSVFDHFPQQ 240 EVTSSPTMMG LGSSRGGGGD GGCSSSFFYD SGFEDMANIG GMGFPQGWTG * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-46 | 1 | 149 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-46 | 1 | 149 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-46 | 1 | 149 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-46 | 1 | 149 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 6e-46 | 1 | 149 | 4 | 171 | NAC domain-containing protein 19 |
4dul_B | 6e-46 | 1 | 149 | 4 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.10834 | 0.0 | ovary| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.006G147400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU966431 | 0.0 | EU966431.1 Zea mays clone 294479 NAC domain-containing protein 21/22 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002454729.1 | 0.0 | protein CUP-SHAPED COTYLEDON 1 | ||||
TrEMBL | A0A1B6PM15 | 0.0 | A0A1B6PM15_SORBI; Uncharacterized protein | ||||
STRING | Sb04g036340.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP697 | 38 | 166 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 3e-79 | NAC domain containing protein 74 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.006G147400.1.p |