PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.006G142000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | MYB | ||||||||
Protein Properties | Length: 283aa MW: 31007.5 Da PI: 6.5003 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.7 | 6.6e-19 | 19 | 66 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT +Ed+llvd v+q+G g+W+++++ g++R++k+c++rw +yl Sobic.006G142000.1.p 19 KGPWTSQEDKLLVDHVRQHGEGRWNSVSKIAGLKRSGKSCRLRWVNYL 66 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.2 | 3.3e-17 | 72 | 116 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T++E+ ++v++++++G++ W+tIar ++ gRt++++k++w+++ Sobic.006G142000.1.p 72 RGKITPQEESIIVQLHALWGNR-WSTIARSLP-GRTDNEIKNYWRTH 116 8999******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.846 | 14 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.69E-29 | 17 | 113 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-15 | 18 | 68 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.7E-17 | 19 | 66 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.5E-23 | 20 | 73 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.24E-11 | 21 | 66 | No hit | No description |
PROSITE profile | PS51294 | 25.396 | 67 | 121 | IPR017930 | Myb domain |
SMART | SM00717 | 6.6E-16 | 71 | 119 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-14 | 72 | 116 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.3E-24 | 74 | 119 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.62E-11 | 76 | 117 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MEGPLGCWGR QEEVDGWRKG PWTSQEDKLL VDHVRQHGEG RWNSVSKIAG LKRSGKSCRL 60 RWVNYLRPDL KRGKITPQEE SIIVQLHALW GNRWSTIARS LPGRTDNEIK NYWRTHFKKG 120 KPSKNIERAR ARFLKQRQEM MQQQQQQSLI VGQQLNEDGD QRRGTCCTGT GATADDDDRG 180 SATGGDACAA PTTTTVATEA AGDLTTIMHD DDAMDCFIMC PMSCDDLGLV LHGAAAGGQR 240 GGTGSCCGST ASDEYRSSEE DGGATWGSLW NLDGAGEVCT LW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 9e-26 | 19 | 119 | 27 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.006G142000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK109620 | 1e-108 | AK109620.1 Oryza sativa Japonica Group cDNA clone:002-138-A05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021319701.1 | 0.0 | transcription repressor MYB6 | ||||
TrEMBL | A0A1B6PLZ5 | 0.0 | A0A1B6PLZ5_SORBI; Uncharacterized protein | ||||
STRING | Pavir.Ga01308.1.p | 1e-111 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3243 | 35 | 84 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13480.1 | 3e-65 | myb domain protein 79 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.006G142000.1.p |