PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.006G133900.1.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

Nin-like

Protein Properties

Length: 946aa MW: 103399 Da PI: 6.146

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.006G133900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	85.4	5.2e-27	569	619	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+ sl++l+kyFs++++dAA +Lgvc+T+LKriCRq+GI+RWP+Rki+++ Sobic.006G133900.1.p 569 EKNFSLDVLRKYFSGSLRDAAMSLGVCPTTLKRICRQHGISRWPSRKINKV 619 899**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.995	553	639	IPR003035	RWP-RK domain
Pfam	PF02042	1.5E-24	572	619	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.41E-22	834	926	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.1E-21	840	922	No hit	No description
PROSITE profile	PS51745	24.173	843	923	IPR000270	PB1 domain
SMART	SM00666	1.8E-19	843	925	IPR000270	PB1 domain
Pfam	PF00564	7.1E-17	844	924	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 946 aa Download sequence Send to blast
MDVPTPPSRT SCNSNISNIG SPMQSFDDPF GVAAMTSFDG YSELCSPSVA DHIFSLLNDP 60 SAAQQMFAMW PSLGSSPRAS AAREDMPFDT YPGPVDAAAS LAQRINSASA LNPTGVDIGL 120 KDSDGLIPNN GSQQGSNIIP RSVGNFLADR MLMALSLFRK SLSDGVLAQV WMPIEHNGRV 180 VLSTSEQPYL LDQDLAGYRE VSRSFYFSVK EEPGLHLGLP GRVFISGVPE WTSSVMYYSK 240 PEYLRMEHAL LHEIRGSLAM PVYDPSKGSC CAVLELVTNK EKPDFDAEMD IVCDALQAVN 300 LQTTTDRGNQ KVYSENQKSA FTEILDVLRA ICHAHMLPLA LTWVPTSNSI TNGFCVQKNI 360 GVDSQPGKAV LRIHETACYV NDAKMQGFLH ACAERHLEKG QGIAGRALKS NLPFFSPDIR 420 EYSIEDYPLA HHARKFGLHA AVAIRLRSTY TGNDDYILEF FLPVNCKGCG EQQMLLNNLS 480 STMQRICKSL RTVSETEIEN VRATAPMCEK TNGSCLPTGN SESSSHEDQP ITESAFQDLS 540 LGDKQGDREP DKARSSSMRV AEKKRSTSEK NFSLDVLRKY FSGSLRDAAM SLGVCPTTLK 600 RICRQHGISR WPSRKINKVN RSLKKIEKVI KSVHGVDRSL QYDPATGSLV PATSLPDKMP 660 FSACDTLPTS SVGKTVEEKS SPKSEQDLSS PDGWQREASQ FHVSSIPKRD GDEVQMLANN 720 NKGSRNYASG IASITPHSNS EDTQGPLCPI VAVNYLHTGE PCYINSPTSL HPSMDSIEGQ 780 TMGMNSPFVQ QADVTMVDGH DTKEQTHPST SGMTDSSSGS ASSQPTFKGN PGHTLLKDRS 840 SPALTVKATY NGDTVRFKFL PTMGWYHLLE EIAKRFKLTT GAFQLKYKDD EDEWVILAND 900 ADLQECMDVL DSISSCNMKL QVRDLPCLIS SSGSSSCLQV EAHSS*

Sequence ? help Back to Top

Protein Sequence Length: 946 aa Download sequence Send to blast

MDVPTPPSRT SCNSNISNIG SPMQSFDDPF GVAAMTSFDG YSELCSPSVA DHIFSLLNDP  60
SAAQQMFAMW PSLGSSPRAS AAREDMPFDT YPGPVDAAAS LAQRINSASA LNPTGVDIGL  120
KDSDGLIPNN GSQQGSNIIP RSVGNFLADR MLMALSLFRK SLSDGVLAQV WMPIEHNGRV  180
VLSTSEQPYL LDQDLAGYRE VSRSFYFSVK EEPGLHLGLP GRVFISGVPE WTSSVMYYSK  240
PEYLRMEHAL LHEIRGSLAM PVYDPSKGSC CAVLELVTNK EKPDFDAEMD IVCDALQAVN  300
LQTTTDRGNQ KVYSENQKSA FTEILDVLRA ICHAHMLPLA LTWVPTSNSI TNGFCVQKNI  360
GVDSQPGKAV LRIHETACYV NDAKMQGFLH ACAERHLEKG QGIAGRALKS NLPFFSPDIR  420
EYSIEDYPLA HHARKFGLHA AVAIRLRSTY TGNDDYILEF FLPVNCKGCG EQQMLLNNLS  480
STMQRICKSL RTVSETEIEN VRATAPMCEK TNGSCLPTGN SESSSHEDQP ITESAFQDLS  540
LGDKQGDREP DKARSSSMRV AEKKRSTSEK NFSLDVLRKY FSGSLRDAAM SLGVCPTTLK  600
RICRQHGISR WPSRKINKVN RSLKKIEKVI KSVHGVDRSL QYDPATGSLV PATSLPDKMP  660
FSACDTLPTS SVGKTVEEKS SPKSEQDLSS PDGWQREASQ FHVSSIPKRD GDEVQMLANN  720
NKGSRNYASG IASITPHSNS EDTQGPLCPI VAVNYLHTGE PCYINSPTSL HPSMDSIEGQ  780
TMGMNSPFVQ QADVTMVDGH DTKEQTHPST SGMTDSSSGS ASSQPTFKGN PGHTLLKDRS  840
SPALTVKATY NGDTVRFKFL PTMGWYHLLE EIAKRFKLTT GAFQLKYKDD EDEWVILAND  900
ADLQECMDVL DSISSCNMKL QVRDLPCLIS SSGSSSCLQV EAHSS*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sbi.6918	0.0	embryo\| panicle\| root

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.006G133900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ727756	0.0	KJ727756.1 Zea mays clone pUT5699 NLP transcription factor (NLP3) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002446731.2	0.0	protein NLP2
Swissprot	Q0JC27	0.0	NLP2_ORYSJ; Protein NLP2
TrEMBL	A0A1B6PLS3	0.0	A0A1B6PLS3_SORBI; Uncharacterized protein
STRING	GRMZM2G105004_P01	0.0	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3670	35	73
Representative plant	OGRP299	16	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Sobic.006G133900.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]