PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G120400.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 424aa    MW: 46713.9 Da    PI: 6.4411
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G120400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM90.52.9e-28572051128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.... 77 
                           lp+G++F+Ptd el+ ++L++k +  +      ++++   ike  +i++++P++Lp  +k + + ++fF +  ++y +gkrk+r     
  Sobic.006G120400.2.p  57 LPAGVKFDPTDLELL-QHLQAKSSPPDsgshmlINEFIPtIKEKeGICYTHPKNLP-GMKMDGSCLHFFNRILNAYDSGKRKRRRiiat 143
                           799************.899999887666666553333334777768**********.566677899******************66899 PP

                   NAM  78 ........tksgyWkatgkdkevlskkgelvglkktLvfykgrap...kgektdWvmheyrl 128
                                     +++W++tg++k++++++g  +g kk+Lv+ykg ++   k+++ +Wvmh+y+l
  Sobic.006G120400.2.p 144 gdicdgvaDGNSRWHKTGSSKPIFDENGVRIGWKKILVLYKGPKKvggKPKRENWVMHQYHL 205
                           9988886555889***************************8754411155699*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.32E-3242224IPR003441NAC domain
PROSITE profilePS5100530.11157224IPR003441NAC domain
PfamPF023654.3E-1258205IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
METSWVMNVL GIAEKIRSAT QSFTLRLGEL FAKPHIKCTN CDCDIDISNV SLVWPALPAG  60
VKFDPTDLEL LQHLQAKSSP PDSGSHMLIN EFIPTIKEKE GICYTHPKNL PGMKMDGSCL  120
HFFNRILNAY DSGKRKRRRI IATGDICDGV ADGNSRWHKT GSSKPIFDEN GVRIGWKKIL  180
VLYKGPKKVG GKPKRENWVM HQYHLGLKED ETNGQFVVCK VFYQLPSKKS DNSKTDVVVE  240
SVSSVAKINP RTPMTYPPQP RRLNNSPCNT EQYTPIQQDQ GEEECGTSKM KVEAAECSAC  300
FAEFSPAIPT SHELRTPMAD PPQPHRLNNS PCNTEQYTHI QVDQGEEECS TSKVKAEAAE  360
CSACVAEQSP AIPTSDEPMQ PTDALDTGLD ASLPFHGLFD GLPDLDNTLP FTGTPSGHLR  420
TTG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133138KRKRRR
2134138RKRRR
3135139KRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G120400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0560890.0BT056089.1 Zea mays full-length cDNA clone ZM_BFb0005H19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002448041.20.0SUPPRESSOR OF GAMMA RESPONSE 1
TrEMBLA0A1Z5REH30.0A0A1Z5REH3_SORBI; Uncharacterized protein
STRINGGRMZM2G450445_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.12e-65NAC family protein