PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G118150.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 226aa    MW: 24245.3 Da    PI: 12.0488
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G118150.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM293.1e-0914519776128
                   NAM  76 r.atksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                           r +++ g W+  g dke +  +ge+ g ++ ++f+++ +  g+kt W m+e+rl
  Sobic.006G118150.1.p 145 RdVAAGGCWRRYGADKEYVGDDGEVYGFRRRFAFHEAGD-PGKKTVWRMKEFRL 197
                           446789*****************************6555.569*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.15E-9139200IPR003441NAC domain
PfamPF023652.0E-4147197IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MVRTFQIRGA PRPSERERSI QHPWRGHRKA KAPAPPRPSR RSGRCRSCRS AASSIPTGPA  60
SPDEALPPPP WRSAASPTRL IVTRASSPTA STCVRRAAGG APVSRVATGA CTTRSGTTTS  120
PPRGRRRREP GGGSGVAGGS EDDVRDVAAG GCWRRYGADK EYVGDDGEVY GFRRRFAFHE  180
AGDPGKKTVW RMKEFRLNEA APALRGRGRG VVFQFHPSAK GLVIH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G118150.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1Z5RDK51e-156A0A1Z5RDK5_SORBI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128912231
Representative plantOGRP1316635