PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G118100.1.p
Common NameSb06g019920, SORBIDRAFT_06g019920
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 440aa    MW: 46990.4 Da    PI: 6.9119
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G118100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.7e-05121142223
                           EETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                           +Cp Cgk F++  ++  H+r+H
  Sobic.006G118100.1.p 121 ECPECGKFFKNDKSMFGHLRSH 142
                           6*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.014120142IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.263120147IPR007087Zinc finger, C2H2
SuperFamilySSF576679.94E-8121142No hitNo description
PfamPF139120.0041121142IPR007087Zinc finger, C2H2
PROSITE patternPS000280122142IPR007087Zinc finger, C2H2
SuperFamilySSF576679.94E-8286313No hitNo description
PROSITE profilePS501579.203291318IPR007087Zinc finger, C2H2
SMARTSM003551291314IPR015880Zinc finger, C2H2-like
PfamPF139123.6E-8291315IPR007087Zinc finger, C2H2
PROSITE patternPS000280293314IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MSKGSLLLWS LVQVQVCIVQ LCVISSWQLT AGQAAGGEFL CRQDPIGRPP RLMSKHGREE  60
LHGHSSDWIF DEELADEGYT SDGGGVPVVE EEEGWLPDDD GGGGAKGSSS GSGGGGGGDV  120
ECPECGKFFK NDKSMFGHLR SHPNRGYKGA TPPVNKLKLS PEPETAAASP SSPSPSGGTH  180
QPCARRDRPL TPFELVCTYA LLTLPYPENS QPTQQVPPPP PSETNVGVVE QGVGTSDMAA  240
AEAHADQYGG SIVKIPKKRR NMLKEIREAH RKKAKQTKLV PPPPPKEKGP YICKHCYAEF  300
STHQALGGHM AGHHRDKKVQ TLNDASSSRA HQGMAGQSQD WKLQVKGGGD DDDGWGDSGL  360
SLQRGLLSEQ LSMASNVPRQ SGQAWGGQMI EMRRQHSGRR SGGLTLAAPA PAPTPTQADD  420
RGGRRLWNID LNAEATEQE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G118100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813526.11e-132uncharacterized protein LOC112890871
TrEMBLA0A1Z5REG30.0A0A1Z5REG3_SORBI; Uncharacterized protein
STRINGSb06g019920.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139162028
Representative plantOGRP1588633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.11e-06C2H2-like zinc finger protein