PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G115700.1.p
Common NameSb06g019710, SORBIDRAFT_06g019710
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 741aa    MW: 78241 Da    PI: 7.2622
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G115700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.31e-30284341260
                           --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                           +Dgy+WrKYGqK+vk se+prsY++Ct+++C+vkkkvers+ +++++ei+Y+g Hnh+k
  Sobic.006G115700.1.p 284 EDGYSWRKYGQKQVKHSEYPRSYFKCTHPNCQVKKKVERSH-EGHITEIIYKGAHNHPK 341
                           8****************************************.***************85 PP
2WRKY104.65.3e-33507565159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++d k v++tYeg+Hnhe
  Sobic.006G115700.1.p 507 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCTVRKHVERASHDLKSVITTYEGKHNHE 565
                           59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-27278342IPR003657WRKY domain
PROSITE profilePS5081122.274278342IPR003657WRKY domain
SuperFamilySSF1182907.98E-25280342IPR003657WRKY domain
SMARTSM007742.2E-34283341IPR003657WRKY domain
PfamPF031061.9E-23284340IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.8E-37492567IPR003657WRKY domain
SuperFamilySSF1182907.06E-29499567IPR003657WRKY domain
PROSITE profilePS5081137.597502567IPR003657WRKY domain
SMARTSM007743.1E-38507566IPR003657WRKY domain
PfamPF031064.5E-25508565IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 741 aa     Download sequence    Send to blast
MEGHVAMEWK DPKPGPESLM GFQTRGVRPD TVGGHSNEDA KPGFEKHGFS VDISSPQEEG  60
RSLPLTPQFG QKTSPGSSLA ERMQARAGFK VPKLNMPFST AAGADNSVPG APSPYLTIPP  120
GLSPATLLES PVFVSNAMGQ PSPTTGKLFM SGSTNDNDPI RFGGPPVGDG PDAFSFKPLD  180
LKSSHYTAEA MKEQNTQVSV KTKTKTQPVQ EANLLGQLNQ QNHNVQTNMN IGGPHDSKLS  240
RLASGTGACN EHVSPPDYGQ TAEEGGDARE DYPPAMAAAT APAEDGYSWR KYGQKQVKHS  300
EYPRSYFKCT HPNCQVKKKV ERSHEGHITE IIYKGAHNHP KPTPSRRPGV QVQPVHPFGD  360
AGGAQQADAA ADNNLGSQSQ QANAAAEANH QPWRAGVQDG MDAATSSPSV PGELCDSSAS  420
MQQVEYAPRG FGSPEGADVT SAPSDEVDGG DRVTLGSMSH AGADAEGDEL ESKRRKVEAY  480
AMDMSTASRA IREPRVVIQT TSEVDILDDG YRWRKYGQKV VKGNPNPRSY YKCTHPGCTV  540
RKHVERASHD LKSVITTYEG KHNHEVPAAR NSGGHPSTAA AATGAGGGGP RRPEHTSSVH  600
DGLMMRHLGG CGVPFGLPLQ PPSRDPLAPM GNYPTYPFTA LGGGGGSGGD GGLTSLPSLP  660
MATGNLSAVE GLKLPMLATS SPLHHQHPLL RHRQAMQAAA LAAAPMAQVK VEDNVAAGVT  720
AAPSVYQQMV RSGLRLGHQM *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-36284568878Probable WRKY transcription factor 4
2lex_A4e-36284568878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.205080.0pollen
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Low expression in senescent leaves (PubMed:11722756). Expressed in both the unfertilized egg cell and the pollen tube (PubMed:21316593). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:21316593}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G115700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7277360.0KJ727736.1 Zea mays clone pUT5677 WRKY transcription factor (WRKY59) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002448017.20.0probable WRKY transcription factor 2
RefseqXP_021318305.10.0probable WRKY transcription factor 2
SwissprotQ9FG771e-120WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLA0A1B6PLI00.0A0A1B6PLI0_SORBI; Uncharacterized protein
STRINGSb06g019710.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP207538100
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-111WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]