PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.006G107700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 207aa MW: 24007.6 Da PI: 9.9919 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87.6 | 6.9e-28 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrngi+KKA EL +LCdaev ++ifsstg+lyey+s Sobic.006G107700.1.p 10 RIDNSTSRQVTFSKRRNGIFKKARELGILCDAEVGLVIFSSTGRLYEYAS 59 8***********************************************86 PP | |||||||
2 | K-box | 87.3 | 3.1e-29 | 75 | 170 | 3 | 98 |
K-box 3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 +++ +++ +++ + +q+e++ L+++++nLq+++R+l+G+dL+ L +k Lq+Le+qLe s++ iR+kK++ll+++i+el +k +q++n Sobic.006G107700.1.p 75 EQQLVANPNTELKFWQREATSLRQQLHNLQENHRQLMGQDLSGLGVKGLQNLENQLEMSVRCIRTKKDQLLVDEIHELNRKGSLIQQDN 163 566777889999***************************************************************************** PP K-box 92 kaLrkkl 98 ++L++k+ Sobic.006G107700.1.p 164 MELHRKV 170 *****98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.7E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.539 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 9.85E-44 | 2 | 77 | No hit | No description |
SuperFamily | SSF55455 | 8.5E-33 | 2 | 91 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.6E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.3E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.6E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.6E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.9E-27 | 83 | 170 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.156 | 86 | 176 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MGRGKIVIRR IDNSTSRQVT FSKRRNGIFK KARELGILCD AEVGLVIFSS TGRLYEYAST 60 SMKSVIDRYG RAKEEQQLVA NPNTELKFWQ REATSLRQQL HNLQENHRQL MGQDLSGLGV 120 KGLQNLENQL EMSVRCIRTK KDQLLVDEIH ELNRKGSLIQ QDNMELHRKV NLIRQENAEL 180 YKVFDKDIQF FRIYVLSHDL FLCPAL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-20 | 1 | 83 | 1 | 83 | MEF2C |
5f28_B | 1e-20 | 1 | 83 | 1 | 83 | MEF2C |
5f28_C | 1e-20 | 1 | 83 | 1 | 83 | MEF2C |
5f28_D | 1e-20 | 1 | 83 | 1 | 83 | MEF2C |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:14701936}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.006G107700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021319518.1 | 1e-132 | MADS-box transcription factor 27 isoform X1 | ||||
Swissprot | Q6EP49 | 1e-114 | MAD27_ORYSJ; MADS-box transcription factor 27 | ||||
TrEMBL | C5Y9V6 | 1e-149 | C5Y9V6_SORBI; Uncharacterized protein | ||||
STRING | Pavir.Ga01454.1.p | 1e-122 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57230.1 | 6e-91 | AGAMOUS-like 16 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.006G107700.1.p |
Publications ? help Back to Top | |||
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