PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G107400.1.p
Common NameSb06g019010, SORBIDRAFT_06g019010
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 357aa    MW: 38345.5 Da    PI: 7.6774
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G107400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1713.6e-53111391128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                           lppGfrFhPtdeel+++yL++kv++ ++ +  ++ e+d++k+ePwdLp+ +k +ekewyfF+ +d+ky+tg r+nrat++gyWkatgkd
  Sobic.006G107400.1.p  11 LPPGFRFHPTDEELITHYLARKVADARFAA-LAVGEADLNKCEPWDLPSLAKMGEKEWYFFCLKDRKYPTGLRTNRATEAGYWKATGKD 98 
                           79*************************999.67***************8888899********************************** PP

                   NAM  90 kevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           k++++   ++ lvg kktLvfy+grapkgek+ Wvmheyrl
  Sobic.006G107400.1.p  99 KDIFRGngGKVLVGSKKTLVFYTGRAPKGEKSGWVMHEYRL 139
                           ****98655666***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-627168IPR003441NAC domain
PROSITE profilePS5100558.48611168IPR003441NAC domain
PfamPF023656.7E-2912139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MEQELHRPME LPPGFRFHPT DEELITHYLA RKVADARFAA LAVGEADLNK CEPWDLPSLA  60
KMGEKEWYFF CLKDRKYPTG LRTNRATEAG YWKATGKDKD IFRGNGGKVL VGSKKTLVFY  120
TGRAPKGEKS GWVMHEYRLH GKLHGAIVPP KAAAGSKNEW VLCRVFKKSL VVGGAAAAAP  180
AAGKRGAMEM SKMNDDMAAI SHLPPLMDVS GAGANVNPAA AAHVTCFSDA LEGHQFFNQQ  240
QTPPEADATD HLGLAASSPF LLSGFAHYGP LHHGATSLVQ LLEGSVVYAA AGGGGLPDMS  300
NKQQQQPVPA PPCKVGGERE RLSLSQDTGL TSDVNPEISS SSGAQRFDHD HLCWGY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-52916815165NO APICAL MERISTEM PROTEIN
1ut4_B2e-52916815165NO APICAL MERISTEM PROTEIN
1ut7_A2e-52916815165NO APICAL MERISTEM PROTEIN
1ut7_B2e-52916815165NO APICAL MERISTEM PROTEIN
4dul_A2e-52916815165NAC domain-containing protein 19
4dul_B2e-52916815165NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G107400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0607700.0BT060770.2 Zea mays full-length cDNA clone ZM_BFb0046M18 mRNA, complete cds.
GenBankBT0635430.0BT063543.1 Zea mays full-length cDNA clone ZM_BFc0075B16 mRNA, complete cds.
GenBankBT0844930.0BT084493.2 Zea mays full-length cDNA clone ZM_BFb0122M24 mRNA, complete cds.
GenBankJX4285300.0JX428530.1 Zea mays subsp. mays clone pUT3130 NAC32 NAC type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002446618.10.0NAC domain-containing protein 92
TrEMBLC5Y9V20.0C5Y9V2_SORBI; Uncharacterized protein
STRINGSb06g019010.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27303787
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.14e-88NAC domain containing protein 100